Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ce--0355
(671 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z81038-3|CAB02759.1| 316|Caenorhabditis elegans Hypothetical pr... 30 1.3
U13646-1|AAC24418.2| 2585|Caenorhabditis elegans Hypothetical pr... 30 1.7
Z93378-7|CAB07587.1| 605|Caenorhabditis elegans Hypothetical pr... 29 4.0
Z93375-5|CAB07566.1| 605|Caenorhabditis elegans Hypothetical pr... 29 4.0
Z81573-1|CAB04625.3| 909|Caenorhabditis elegans Hypothetical pr... 29 4.0
Z66497-4|CAA91284.1| 401|Caenorhabditis elegans Hypothetical pr... 29 4.0
Z81581-4|CAB04663.2| 568|Caenorhabditis elegans Hypothetical pr... 28 5.3
Z70286-6|CAA94293.1| 3672|Caenorhabditis elegans Hypothetical pr... 28 5.3
Z70286-5|CAB61016.1| 3704|Caenorhabditis elegans Hypothetical pr... 28 5.3
L23651-5|AAU87829.1| 1127|Caenorhabditis elegans Nuclear pore co... 28 5.3
D83173-1|BAA11828.1| 1518|Caenorhabditis elegans laminin A protein. 28 5.3
AB016806-1|BAA32347.1| 3704|Caenorhabditis elegans laminin alpha... 28 5.3
AB001074-1|BAA19229.1| 3704|Caenorhabditis elegans laminin alpha... 28 5.3
U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis def... 27 9.2
U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis def... 27 9.2
AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein. 27 9.2
>Z81038-3|CAB02759.1| 316|Caenorhabditis elegans Hypothetical
protein C25A1.5 protein.
Length = 316
Score = 30.3 bits (65), Expect = 1.3
Identities = 14/40 (35%), Positives = 19/40 (47%), Gaps = 4/40 (10%)
Frame = +3
Query: 180 SIYPWVLWSYLSTMTWY---QRLSATILQWRPSPD-PGQV 287
SI W W + +TW L + W+PSPD P Q+
Sbjct: 160 SILLWSAWFVIGVLTWTLTEYSLHRWVFHWKPSPDSPNQI 199
>U13646-1|AAC24418.2| 2585|Caenorhabditis elegans Hypothetical protein
ZK783.1 protein.
Length = 2585
Score = 29.9 bits (64), Expect = 1.7
Identities = 17/51 (33%), Positives = 26/51 (50%)
Frame = +3
Query: 315 HTGIRSECRSPCSRPKKR*CEILEIVLKCCECVTCVSVCFYDVRVLRSECE 467
H+G + C+ P +R CE +E + V+C+SV Y+ L S CE
Sbjct: 1653 HSGFEGDGIKKCTNPLERSCEDVEKFCGRVDHVSCLSVRIYN-GSLSSVCE 1702
>Z93378-7|CAB07587.1| 605|Caenorhabditis elegans Hypothetical
protein C38C6.6 protein.
Length = 605
Score = 28.7 bits (61), Expect = 4.0
Identities = 13/27 (48%), Positives = 17/27 (62%)
Frame = -2
Query: 310 DGHRGQLRTWPGSGEGLHCKMVADNRW 230
DGH+ QLRT GEG H + AD ++
Sbjct: 107 DGHKAQLRT-KTDGEGEHALLKADGKY 132
>Z93375-5|CAB07566.1| 605|Caenorhabditis elegans Hypothetical
protein C38C6.6 protein.
Length = 605
Score = 28.7 bits (61), Expect = 4.0
Identities = 13/27 (48%), Positives = 17/27 (62%)
Frame = -2
Query: 310 DGHRGQLRTWPGSGEGLHCKMVADNRW 230
DGH+ QLRT GEG H + AD ++
Sbjct: 107 DGHKAQLRT-KTDGEGEHALLKADGKY 132
>Z81573-1|CAB04625.3| 909|Caenorhabditis elegans Hypothetical
protein M02G9.1 protein.
Length = 909
Score = 28.7 bits (61), Expect = 4.0
Identities = 22/86 (25%), Positives = 36/86 (41%), Gaps = 5/86 (5%)
Frame = +3
Query: 189 PWVLWSYLSTMTWYQRLSATILQWRPSPDPGQVRSCPRCPSL-HTGIRSEC----RSPCS 353
P + + + T + + T Q P+P P Q + CP L S+C + PC
Sbjct: 485 PKCIIATIKTPSQQPQFVVTTTQAPPAPAPQQQQQLASCPQLCQPQCTSQCVQQQQCPCQ 544
Query: 354 RPKKR*CEILEIVLKCCECVTCVSVC 431
+ + C+ + C+ V CV VC
Sbjct: 545 QTCQTGCQQHNPDARVCQNV-CVEVC 569
>Z66497-4|CAA91284.1| 401|Caenorhabditis elegans Hypothetical
protein K08F8.2 protein.
Length = 401
Score = 28.7 bits (61), Expect = 4.0
Identities = 19/43 (44%), Positives = 22/43 (51%), Gaps = 4/43 (9%)
Frame = +3
Query: 237 LSATILQWRPSPDPGQVR----SCPRCPSLHTGIRSECRSPCS 353
LSA + Q RPSP Q R S P HTG +S+C S S
Sbjct: 267 LSALLSQRRPSPTVPQSRTEHISGLNSPPRHTGNKSDCESVSS 309
>Z81581-4|CAB04663.2| 568|Caenorhabditis elegans Hypothetical
protein T02E1.2 protein.
Length = 568
Score = 28.3 bits (60), Expect = 5.3
Identities = 15/39 (38%), Positives = 23/39 (58%), Gaps = 2/39 (5%)
Frame = -2
Query: 427 TLTH-VTHS-QHFNTISNISHYRFLGRLHGDRHSERIPV 317
TL H T+S QHF+ ++ Y+F G L D +E +P+
Sbjct: 342 TLAHFATYSFQHFDEFVHVVPYKFSGTLDRDLRNEIMPI 380
>Z70286-6|CAA94293.1| 3672|Caenorhabditis elegans Hypothetical protein
K08C7.3b protein.
Length = 3672
Score = 28.3 bits (60), Expect = 5.3
Identities = 14/64 (21%), Positives = 31/64 (48%)
Frame = -3
Query: 225 KSSLTGNSTEPRDKLISSQSGPQEYRFDGRGYATMAGRGYLTPQSNQVLLFFRTYAPNGL 46
K + N + + K I+ + DG GY + + ++ ++ L F T++P+GL
Sbjct: 2876 KGNTNVNGAQKKPK-ITDNADELVVSLDGEGYTSYKPSHWNPRKATKISLSFLTFSPHGL 2934
Query: 45 IYIL 34
++ +
Sbjct: 2935 LFFV 2938
>Z70286-5|CAB61016.1| 3704|Caenorhabditis elegans Hypothetical protein
K08C7.3a protein.
Length = 3704
Score = 28.3 bits (60), Expect = 5.3
Identities = 14/64 (21%), Positives = 31/64 (48%)
Frame = -3
Query: 225 KSSLTGNSTEPRDKLISSQSGPQEYRFDGRGYATMAGRGYLTPQSNQVLLFFRTYAPNGL 46
K + N + + K I+ + DG GY + + ++ ++ L F T++P+GL
Sbjct: 2876 KGNTNVNGAQKKPK-ITDNADELVVSLDGEGYTSYKPSHWNPRKATKISLSFLTFSPHGL 2934
Query: 45 IYIL 34
++ +
Sbjct: 2935 LFFV 2938
>L23651-5|AAU87829.1| 1127|Caenorhabditis elegans Nuclear pore
complex protein protein15 protein.
Length = 1127
Score = 28.3 bits (60), Expect = 5.3
Identities = 23/80 (28%), Positives = 33/80 (41%), Gaps = 4/80 (5%)
Frame = +3
Query: 123 SWHIHGHRTCTLEGQTARRSIYPWVLWSYLSTMTWYQRLS---ATILQWRPSPDPGQVRS 293
+WH HR+ + Y WVL S W + S A I P P G RS
Sbjct: 29 NWHASAHRSEVTSNCASLNDRYCWVL-SRNQIFIWERAKSSHRAIIPTQLPLPTSGLPRS 87
Query: 294 CPRCPSLHTGI-RSECRSPC 350
+C ++ G+ R ++PC
Sbjct: 88 V-KCVVVYDGVHRGANKTPC 106
>D83173-1|BAA11828.1| 1518|Caenorhabditis elegans laminin A protein.
Length = 1518
Score = 28.3 bits (60), Expect = 5.3
Identities = 14/64 (21%), Positives = 31/64 (48%)
Frame = -3
Query: 225 KSSLTGNSTEPRDKLISSQSGPQEYRFDGRGYATMAGRGYLTPQSNQVLLFFRTYAPNGL 46
K + N + + K I+ + DG GY + + ++ ++ L F T++P+GL
Sbjct: 690 KGNTNVNGAQKKPK-ITDNADELVVSLDGEGYTSYKPSHWNPRKATKISLSFLTFSPHGL 748
Query: 45 IYIL 34
++ +
Sbjct: 749 LFFV 752
>AB016806-1|BAA32347.1| 3704|Caenorhabditis elegans laminin alpha
chain protein.
Length = 3704
Score = 28.3 bits (60), Expect = 5.3
Identities = 14/64 (21%), Positives = 31/64 (48%)
Frame = -3
Query: 225 KSSLTGNSTEPRDKLISSQSGPQEYRFDGRGYATMAGRGYLTPQSNQVLLFFRTYAPNGL 46
K + N + + K I+ + DG GY + + ++ ++ L F T++P+GL
Sbjct: 2876 KGNTNVNGAQKKPK-ITDNADELVVSLDGEGYTSYKPSHWNPRKATKISLSFLTFSPHGL 2934
Query: 45 IYIL 34
++ +
Sbjct: 2935 LFFV 2938
>AB001074-1|BAA19229.1| 3704|Caenorhabditis elegans laminin alpha
protein.
Length = 3704
Score = 28.3 bits (60), Expect = 5.3
Identities = 14/64 (21%), Positives = 31/64 (48%)
Frame = -3
Query: 225 KSSLTGNSTEPRDKLISSQSGPQEYRFDGRGYATMAGRGYLTPQSNQVLLFFRTYAPNGL 46
K + N + + K I+ + DG GY + + ++ ++ L F T++P+GL
Sbjct: 2876 KGNTNVNGAQKKPK-ITDNADELVVSLDGEGYTSYKPSHWNPRKATKISLSFLTFSPHGL 2934
Query: 45 IYIL 34
++ +
Sbjct: 2935 LFFV 2938
>U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis defect
protein 1, isoformb protein.
Length = 1437
Score = 27.5 bits (58), Expect = 9.2
Identities = 20/46 (43%), Positives = 25/46 (54%), Gaps = 2/46 (4%)
Frame = +1
Query: 262 DPRRILARFGAVPDVHHYIRVSVLNAD--HHVVVLKNGSVKY*KLC 393
DPRR ARF A+ D HH I S +NAD V L ++K + C
Sbjct: 1068 DPRR--ARF-ALTDFHHCIESSRVNADEIRKTVQLTENNIKKLENC 1110
>U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis defect
protein 1, isoforma protein.
Length = 1435
Score = 27.5 bits (58), Expect = 9.2
Identities = 20/46 (43%), Positives = 25/46 (54%), Gaps = 2/46 (4%)
Frame = +1
Query: 262 DPRRILARFGAVPDVHHYIRVSVLNAD--HHVVVLKNGSVKY*KLC 393
DPRR ARF A+ D HH I S +NAD V L ++K + C
Sbjct: 1068 DPRR--ARF-ALTDFHHCIESSRVNADEIRKTVQLTENNIKKLENC 1110
>AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein.
Length = 1018
Score = 27.5 bits (58), Expect = 9.2
Identities = 20/46 (43%), Positives = 25/46 (54%), Gaps = 2/46 (4%)
Frame = +1
Query: 262 DPRRILARFGAVPDVHHYIRVSVLNAD--HHVVVLKNGSVKY*KLC 393
DPRR ARF A+ D HH I S +NAD V L ++K + C
Sbjct: 651 DPRR--ARF-ALTDFHHCIESSRVNADEIRKTVQLTENNIKKLENC 693
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,225,836
Number of Sequences: 27780
Number of extensions: 415761
Number of successful extensions: 1096
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 1030
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1096
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1518563232
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -