Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0354
         (719 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF225975-1|AAF74117.1|  256|Tribolium castaneum unknown protein.       23   1.9  
X91618-1|CAA62821.1|  524|Tribolium castaneum hunchback protein.       22   4.4  
EF592539-1|ABQ95985.1|  630|Tribolium castaneum beta-N-acetylglu...    22   5.8  
AY675073-1|AAV74190.1|  533|Tribolium castaneum chitinase 5 prot...    21   7.6  

>AF225975-1|AAF74117.1|  256|Tribolium castaneum unknown protein.
          Length = 256

 Score = 23.4 bits (48), Expect = 1.9
 Identities = 12/25 (48%), Positives = 17/25 (68%), Gaps = 1/25 (4%)
 Frame = -2

Query: 127 VDE-VRIITDGRINFIEPSTGLEKK 56
           VDE   ++T+GRI+ I+PS  L  K
Sbjct: 156 VDESASVMTNGRIHGIQPSPTLPSK 180


>X91618-1|CAA62821.1|  524|Tribolium castaneum hunchback protein.
          Length = 524

 Score = 22.2 bits (45), Expect = 4.4
 Identities = 8/24 (33%), Positives = 12/24 (50%)
 Frame = +3

Query: 201 CMHCSAAFSTHGLILLYGGYSRLH 272
           C +C+ AF    L  ++ GY   H
Sbjct: 473 CQYCNIAFGDAVLYTIHMGYHGFH 496


>EF592539-1|ABQ95985.1|  630|Tribolium castaneum
           beta-N-acetylglucosaminidase FDL protein.
          Length = 630

 Score = 21.8 bits (44), Expect = 5.8
 Identities = 8/21 (38%), Positives = 14/21 (66%)
 Frame = -3

Query: 477 RLRPLNRVIKSNTPAHDKDCW 415
           R+R +  V++ +TPAH  + W
Sbjct: 317 RIRGIRVVLEVDTPAHAGNGW 337


>AY675073-1|AAV74190.1|  533|Tribolium castaneum chitinase 5
           protein.
          Length = 533

 Score = 21.4 bits (43), Expect = 7.6
 Identities = 10/31 (32%), Positives = 17/31 (54%)
 Frame = +2

Query: 155 D*HILWNKHNYRLSLLYALLSGFFHPRPDIA 247
           D H L    N  +++LYA ++ +  P P I+
Sbjct: 375 DFHGLCGPKNPLINILYANMNSYSVPEPTIS 405


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 178,546
Number of Sequences: 336
Number of extensions: 4051
Number of successful extensions: 10
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 19155320
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)