Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ce--0354
(719 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC1672.07 |||U3 snoRNP-associated protein Utp21 |Schizosacchar... 31 0.13
SPCC5E4.03c |taf72||transcription factor TFIID complex subunit 5... 29 0.51
SPAC11E3.05 |||ubiquitin-protein ligase E3|Schizosaccharomyces p... 29 0.67
SPAC7D4.14c |||sequence orphan|Schizosaccharomyces pombe|chr 1||... 29 0.88
SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual 27 2.0
SPAPB1E7.06c |eme1||Holliday junction resolvase subunit Eme1|Sch... 27 3.6
SPAC959.10 |sen15||tRNA-splicing endonuclease subunit Sen15|Schi... 26 4.7
SPBC1709.02c |vas2|SPBC1734.18c|valine-tRNA ligase Vas2 |Schizos... 26 6.2
SPAC20G8.01 |cdc17||ATP-dependent DNA ligase Cdc17|Schizosacchar... 25 8.2
SPAC1687.09 |||conserved fungal protein|Schizosaccharomyces pomb... 25 8.2
>SPCC1672.07 |||U3 snoRNP-associated protein Utp21
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 902
Score = 31.5 bits (68), Expect = 0.13
Identities = 21/70 (30%), Positives = 33/70 (47%), Gaps = 1/70 (1%)
Frame = +3
Query: 114 RTSSTLSRALLNHPTDISSGTSITTVC-RCCMHCSAAFSTHGLILLYGGYSRLHRGLSTQ 290
RT + S+ L H S GTS+ +VC CC + S+ G++ +Y S + R Q
Sbjct: 425 RTWNWKSKTLGQHVLPTSDGTSVRSVCVSCCGNFGLIGSSKGVVDVYNMQSGIKRKSFGQ 484
Query: 291 NLARRQPQLA 320
+ +P A
Sbjct: 485 SSLSGKPVTA 494
>SPCC5E4.03c |taf72||transcription factor TFIID complex subunit 5
Taf72|Schizosaccharomyces pombe|chr 3|||Manual
Length = 643
Score = 29.5 bits (63), Expect = 0.51
Identities = 13/23 (56%), Positives = 13/23 (56%)
Frame = -3
Query: 162 CQSDGSARLWRVSTKFALSLMDG 94
C D SARLW V TK AL G
Sbjct: 397 CSEDASARLWSVDTKTALVAYKG 419
>SPAC11E3.05 |||ubiquitin-protein ligase E3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1323
Score = 29.1 bits (62), Expect = 0.67
Identities = 18/52 (34%), Positives = 25/52 (48%), Gaps = 7/52 (13%)
Frame = +3
Query: 120 SSTLSRALLNHPTDISSGTSITTVCRCC------MHCS-AAFSTHGLILLYG 254
SS + L+NH +S TS T +C C M C+ S HGL ++ G
Sbjct: 1229 SSPSEKTLVNHCNSCNSTTSNTRICEKCYSLVPRMSCTFCCLSIHGLCIVCG 1280
>SPAC7D4.14c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 551
Score = 28.7 bits (61), Expect = 0.88
Identities = 13/37 (35%), Positives = 19/37 (51%)
Frame = -2
Query: 565 SPMRFVRPVSTLPGPTS*RVLRLALPCTQQTSSTEPG 455
SP PVS + P+ R +A+PC + S+E G
Sbjct: 233 SPPSSALPVSLVSAPSPPRATNVAVPCLKHLESSEQG 269
>SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual
Length = 1236
Score = 27.5 bits (58), Expect = 2.0
Identities = 25/87 (28%), Positives = 40/87 (45%), Gaps = 1/87 (1%)
Frame = +3
Query: 30 SSMEPLLFPFFSSPVDGSIKLIRPSVIMRTSSTLSRALLNHPTDISSG-TSITTVCRCCM 206
SS+ +L SSP S+ + S TSST S A + P+ ISS +S +T+
Sbjct: 574 SSVSSILSSSTSSPSSTSLSISSSS----TSSTFSSASTSSPSSISSSISSSSTILSSPT 629
Query: 207 HCSAAFSTHGLILLYGGYSRLHRGLST 287
+++ ++ G S L +ST
Sbjct: 630 PSTSSLMISSSSIISGSSSILSSSIST 656
>SPAPB1E7.06c |eme1||Holliday junction resolvase subunit
Eme1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 738
Score = 26.6 bits (56), Expect = 3.6
Identities = 9/36 (25%), Positives = 21/36 (58%)
Frame = -2
Query: 229 VEKAAEQCIQQRQTVVMLVPEDMSVGWFSKALESVD 122
V++ E+C+ + +++L P+D + W+S +D
Sbjct: 432 VKRTKEECLSE---IILLSPDDWASSWYSTVRSQLD 464
>SPAC959.10 |sen15||tRNA-splicing endonuclease subunit
Sen15|Schizosaccharomyces pombe|chr 1|||Manual
Length = 143
Score = 26.2 bits (55), Expect = 4.7
Identities = 19/54 (35%), Positives = 27/54 (50%), Gaps = 4/54 (7%)
Frame = -3
Query: 522 RLHREFYALRCHVLN----RLRPLNRVIKSNTPAHDKDCWQTPLWLFDALDIEF 373
RL + + L+ HVL+ RPL I N DK + PL+L + + IEF
Sbjct: 32 RLGQRWCELKVHVLDIDLKTKRPLLSGIPVNGQLKDKLQYVLPLYLQETISIEF 85
>SPBC1709.02c |vas2|SPBC1734.18c|valine-tRNA ligase Vas2
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 980
Score = 25.8 bits (54), Expect = 6.2
Identities = 11/33 (33%), Positives = 19/33 (57%)
Frame = +3
Query: 240 ILLYGGYSRLHRGLSTQNLARRQPQLASERTEH 338
+L GG+ H GLSTQ++ ++ ++T H
Sbjct: 170 VLFLGGFD--HAGLSTQSVVEKKLWYTQKKTRH 200
>SPAC20G8.01 |cdc17||ATP-dependent DNA ligase
Cdc17|Schizosaccharomyces pombe|chr 1|||Manual
Length = 768
Score = 25.4 bits (53), Expect = 8.2
Identities = 9/21 (42%), Positives = 13/21 (61%)
Frame = -3
Query: 447 SNTPAHDKDCWQTPLWLFDAL 385
S+ PAH D W P +L++ L
Sbjct: 676 SDVPAHQPDVWFEPKYLWEVL 696
>SPAC1687.09 |||conserved fungal protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1379
Score = 25.4 bits (53), Expect = 8.2
Identities = 11/24 (45%), Positives = 17/24 (70%)
Frame = +2
Query: 83 DKINPSISDNANFVDTLQSLAEPS 154
DKI P++ +N + T QS+A+PS
Sbjct: 1163 DKIFPAVHENPPPLKTKQSIAKPS 1186
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,143,784
Number of Sequences: 5004
Number of extensions: 68153
Number of successful extensions: 205
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 194
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 205
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 337208592
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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