Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ce--0354
(719 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
09_04_0504 + 18180321-18181013 31 0.70
09_04_0328 + 16711336-16711731,16711818-16711956,16712533-16713116 31 1.2
04_04_1630 - 34896021-34896143,34896329-34896403,34896500-348965... 30 2.1
01_01_0829 + 6471032-6471870,6472490-6472685,6472772-6472956,647... 30 2.1
08_02_0939 - 22820618-22821478 28 6.5
08_02_0938 + 22814748-22815608 28 6.5
06_03_0828 + 25137782-25138312,25141349-25141588 28 6.5
06_03_0173 - 17519768-17521285 28 8.6
05_01_0569 + 5056261-5057712 28 8.6
04_04_0911 - 29340222-29341103 28 8.6
03_06_0519 - 34481751-34482722 28 8.6
03_02_0511 + 9016215-9016425,9017292-9017365,9018399-9018609,901... 28 8.6
02_01_0706 + 5270233-5270326,5270767-5270914,5271018-5271089,527... 28 8.6
>09_04_0504 + 18180321-18181013
Length = 230
Score = 31.5 bits (68), Expect = 0.70
Identities = 22/74 (29%), Positives = 36/74 (48%)
Frame = -2
Query: 634 TGAPPSSPAAIVKGSLSAKAVRVSPMRFVRPVSTLPGPTS*RVLRLALPCTQQTSSTEPG 455
+ + PSSPA K S ++K RVSP +PV P PT+ +A P + ++ +
Sbjct: 108 SSSSPSSPAKSPKRSKNSKRRRVSPPP-PQPVPAPPPPTTADAADVAAPTAPEATTKKAP 166
Query: 454 YQIKYASTRQGLLA 413
+ A+ Q +A
Sbjct: 167 EDLTAAAATQPAVA 180
>09_04_0328 + 16711336-16711731,16711818-16711956,16712533-16713116
Length = 372
Score = 30.7 bits (66), Expect = 1.2
Identities = 16/52 (30%), Positives = 26/52 (50%)
Frame = +3
Query: 282 STQNLARRQPQLASERTEHFCR*LPNPARIQTQYPVHQKAKAAFASSPCRVL 437
S+ +L R P + +CR + R + + P +K+ AA A+ CRVL
Sbjct: 243 SSSSLKRAAPAEDAAAEAEYCRQSSSKRRREAETPTPEKSAAAAAAPACRVL 294
>04_04_1630 -
34896021-34896143,34896329-34896403,34896500-34896556,
34897176-34897352,34897426-34897492,34898043-34898101,
34898188-34898241,34898455-34898604,34898709-34898918,
34898980-34899039,34899399-34899527,34899616-34899720,
34899935-34900024,34900630-34900695,34901047-34901115,
34901348-34901467,34901572-34901634,34901681-34901817,
34902070-34902160,34902298-34902463,34902700-34904172,
34905666-34905940,34906322-34906819,34906996-34907145,
34907840-34907911,34908006-34908266,34908478-34908558,
34908745-34908996,34909323-34909382,34909602-34909853,
34910385-34910549,34910589-34910849,34911267-34912307,
34913398-34913457,34914055-34914165,34914448-34914534,
34915227-34915300,34915397-34915490,34915644-34915689,
34916397-34916521
Length = 2501
Score = 29.9 bits (64), Expect = 2.1
Identities = 14/42 (33%), Positives = 20/42 (47%)
Frame = -2
Query: 640 WGTGAPPSSPAAIVKGSLSAKAVRVSPMRFVRPVSTLPGPTS 515
W +G+PP+SP + V+ +A R V P PTS
Sbjct: 200 WASGSPPTSPVSGVRRGACRRAPRKPLPPIAAHVPPFPAPTS 241
>01_01_0829 +
6471032-6471870,6472490-6472685,6472772-6472956,
6473206-6473539,6473629-6473833,6474927-6475033,
6475117-6475269
Length = 672
Score = 29.9 bits (64), Expect = 2.1
Identities = 12/28 (42%), Positives = 18/28 (64%)
Frame = -2
Query: 166 DMSVGWFSKALESVDEVRIITDGRINFI 83
DM++G F A+ SVD+ RII G + +
Sbjct: 402 DMALGRFDHAVSSVDKARIIDQGNVEVV 429
>08_02_0939 - 22820618-22821478
Length = 286
Score = 28.3 bits (60), Expect = 6.5
Identities = 16/49 (32%), Positives = 23/49 (46%)
Frame = -1
Query: 647 GELGYRGPPFEPRCHR*RFVKRQGGQGVANAFRQASKHFARADFIESST 501
G++ PP +P C R RFV +G+ Q K AR + E +T
Sbjct: 177 GDVAMPNPPSDPHCRR-RFVTNSVFKGLLKDLAQEEK--ARRSYFEKAT 222
>08_02_0938 + 22814748-22815608
Length = 286
Score = 28.3 bits (60), Expect = 6.5
Identities = 16/49 (32%), Positives = 23/49 (46%)
Frame = -1
Query: 647 GELGYRGPPFEPRCHR*RFVKRQGGQGVANAFRQASKHFARADFIESST 501
G++ PP +P C R RFV +G+ Q K AR + E +T
Sbjct: 177 GDVAMPNPPSDPHCRR-RFVTNSVFKGLLKDLAQEEK--ARRSYFEKAT 222
>06_03_0828 + 25137782-25138312,25141349-25141588
Length = 256
Score = 28.3 bits (60), Expect = 6.5
Identities = 16/43 (37%), Positives = 22/43 (51%)
Frame = +1
Query: 496 QGVELSMKSARAKCLLA*RNALATP*PPWRLTNL*RWQRGSKG 624
+G S + A + +A R+A +T PWR T RW RG G
Sbjct: 101 RGGAASREIAMRRSGVAARSAASTHSTPWRRTTGGRWARGGGG 143
>06_03_0173 - 17519768-17521285
Length = 505
Score = 27.9 bits (59), Expect = 8.6
Identities = 14/34 (41%), Positives = 19/34 (55%)
Frame = -3
Query: 138 LWRVSTKFALSLMDGLILSNHRQGWRRRETAKAP 37
LW + A+SL+ L L++HR G RRR P
Sbjct: 5 LWVLWATLAVSLLCYLYLTSHRLGSRRRRWPPGP 38
>05_01_0569 + 5056261-5057712
Length = 483
Score = 27.9 bits (59), Expect = 8.6
Identities = 17/48 (35%), Positives = 20/48 (41%)
Frame = -3
Query: 432 HDKDCWQTPLWLFDALDIEFGFWLDSAASDKNALCAHWLTEADDALNS 289
HDK WQ PLWL W+ + N LT A D LN+
Sbjct: 335 HDKLGWQQPLWLVGGASYPLTSWMLVPYTQPN------LTWAQDRLNA 376
>04_04_0911 - 29340222-29341103
Length = 293
Score = 27.9 bits (59), Expect = 8.6
Identities = 14/50 (28%), Positives = 25/50 (50%)
Frame = -3
Query: 369 FWLDSAASDKNALCAHWLTEADDALNSEWISHGAIWNNHRTAISGRGWKK 220
F LDSAA++K L + +D W + WN+ ++ + +GW +
Sbjct: 113 FPLDSAANEKGLLLSF-----EDRTGKLWRFRYSYWNSSQSYVMTKGWSR 157
>03_06_0519 - 34481751-34482722
Length = 323
Score = 27.9 bits (59), Expect = 8.6
Identities = 15/31 (48%), Positives = 16/31 (51%)
Frame = -2
Query: 661 TTHYRANWGTGAPPSSPAAIVKGSLSAKAVR 569
TT R+N GAPP PAA G S A R
Sbjct: 152 TTARRSNRLAGAPPDPPAAATAGPTSKTARR 182
>03_02_0511 +
9016215-9016425,9017292-9017365,9018399-9018609,
9019235-9019263,9019646-9020798,9021022-9021251
Length = 635
Score = 27.9 bits (59), Expect = 8.6
Identities = 17/39 (43%), Positives = 23/39 (58%), Gaps = 1/39 (2%)
Frame = -2
Query: 628 APPSSPAAIVKGSLSAKAVRVSPMRFVRPVSTLP-GPTS 515
APPSSPA+ ++ + A SP RF+ + P GPTS
Sbjct: 218 APPSSPASFSNSAIPSTA--QSPNRFLSISANSPGGPTS 254
>02_01_0706 +
5270233-5270326,5270767-5270914,5271018-5271089,
5271153-5271263,5271363-5271434,5271533-5271604,
5272126-5272197,5272281-5272346,5272426-5272491,
5272601-5272971,5273203-5273456,5273886-5274157,
5274333-5274474,5275174-5275313,5275381-5275537,
5275797-5275965,5276048-5276088
Length = 772
Score = 27.9 bits (59), Expect = 8.6
Identities = 14/40 (35%), Positives = 19/40 (47%)
Frame = -2
Query: 169 EDMSVGWFSKALESVDEVRIITDGRINFIEPSTGLEKKGN 50
E V W S L ++D + ITD RI+ P + GN
Sbjct: 657 EQFLVDWASPHLHNLDSLERITDPRIHASMPPQAISTLGN 696
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,457,736
Number of Sequences: 37544
Number of extensions: 527742
Number of successful extensions: 1676
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 1611
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1676
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1874582652
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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