Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ce--0354
(719 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_4159| Best HMM Match : Vpu (HMM E-Value=2) 41 0.001
SB_11176| Best HMM Match : PTS_EIIB (HMM E-Value=4.4) 37 0.019
SB_29769| Best HMM Match : TNFR_c6 (HMM E-Value=3.60001e-40) 37 0.019
SB_5500| Best HMM Match : No HMM Matches (HMM E-Value=.) 37 0.019
SB_37596| Best HMM Match : No HMM Matches (HMM E-Value=.) 36 0.033
SB_26639| Best HMM Match : No HMM Matches (HMM E-Value=.) 36 0.033
SB_25723| Best HMM Match : Vicilin_N (HMM E-Value=0.0045) 36 0.033
SB_17217| Best HMM Match : No HMM Matches (HMM E-Value=.) 36 0.033
SB_12571| Best HMM Match : SBF (HMM E-Value=1.6e-37) 36 0.033
SB_510| Best HMM Match : No HMM Matches (HMM E-Value=.) 36 0.033
SB_55621| Best HMM Match : No HMM Matches (HMM E-Value=.) 36 0.033
SB_46370| Best HMM Match : No HMM Matches (HMM E-Value=.) 36 0.033
SB_17246| Best HMM Match : No HMM Matches (HMM E-Value=.) 36 0.033
SB_12056| Best HMM Match : No HMM Matches (HMM E-Value=.) 36 0.033
SB_10526| Best HMM Match : CUE (HMM E-Value=6.5) 36 0.033
SB_49172| Best HMM Match : UCR_TM (HMM E-Value=9.8) 31 0.94
SB_1601| Best HMM Match : RuvB_C (HMM E-Value=3.6) 30 1.6
SB_37618| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.6
SB_51122| Best HMM Match : UCR_TM (HMM E-Value=5.5) 29 3.8
SB_28728| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.8
SB_47621| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.6
SB_20601| Best HMM Match : F5_F8_type_C (HMM E-Value=9.5e-24) 28 6.6
SB_14165| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.6
SB_6355| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.6
SB_34582| Best HMM Match : PAP2 (HMM E-Value=0.013) 28 8.8
SB_5478| Best HMM Match : NDT80_PhoG (HMM E-Value=3.6e-21) 28 8.8
SB_14684| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.8
>SB_4159| Best HMM Match : Vpu (HMM E-Value=2)
Length = 779
Score = 40.7 bits (91), Expect = 0.001
Identities = 26/78 (33%), Positives = 38/78 (48%), Gaps = 8/78 (10%)
Frame = -2
Query: 673 VNCNTTHYRANWGTGAPPSSPAAI----VKGSLSAKAVRVSPMRFVRPVSTLP----GPT 518
VNCNTTHYRANW + A ++ + + S++ V + P+ PVS P GP
Sbjct: 80 VNCNTTHYRANWSSTAVAAALELVDPPGCRNSITGGPVSMEPLTTGGPVSMEPLTTGGPV 139
Query: 517 S*RVLRLALPCTQQTSST 464
S L P + + +T
Sbjct: 140 SMEPLTTGGPVSMEPLTT 157
>SB_11176| Best HMM Match : PTS_EIIB (HMM E-Value=4.4)
Length = 117
Score = 36.7 bits (81), Expect = 0.019
Identities = 17/31 (54%), Positives = 19/31 (61%)
Frame = -2
Query: 718 AQVFPQVTTL*TPAQVNCNTTHYRANWGTGA 626
A VFP + VNCNTTHYRANW + A
Sbjct: 36 ASVFPSHDVV-KRRPVNCNTTHYRANWSSTA 65
>SB_29769| Best HMM Match : TNFR_c6 (HMM E-Value=3.60001e-40)
Length = 768
Score = 36.7 bits (81), Expect = 0.019
Identities = 17/31 (54%), Positives = 19/31 (61%)
Frame = -2
Query: 718 AQVFPQVTTL*TPAQVNCNTTHYRANWGTGA 626
A VFP + VNCNTTHYRANW + A
Sbjct: 28 ASVFPSHDVV-KRRPVNCNTTHYRANWSSTA 57
>SB_5500| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 197
Score = 36.7 bits (81), Expect = 0.019
Identities = 17/31 (54%), Positives = 19/31 (61%)
Frame = -2
Query: 718 AQVFPQVTTL*TPAQVNCNTTHYRANWGTGA 626
A VFP + VNCNTTHYRANW + A
Sbjct: 42 ASVFPSHDVV-KRRPVNCNTTHYRANWSSTA 71
>SB_37596| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 408
Score = 35.9 bits (79), Expect = 0.033
Identities = 13/16 (81%), Positives = 14/16 (87%)
Frame = -2
Query: 673 VNCNTTHYRANWGTGA 626
VNCNTTHYRANW + A
Sbjct: 13 VNCNTTHYRANWSSTA 28
>SB_26639| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 287
Score = 35.9 bits (79), Expect = 0.033
Identities = 13/16 (81%), Positives = 14/16 (87%)
Frame = -2
Query: 673 VNCNTTHYRANWGTGA 626
VNCNTTHYRANW + A
Sbjct: 69 VNCNTTHYRANWSSTA 84
>SB_25723| Best HMM Match : Vicilin_N (HMM E-Value=0.0045)
Length = 2506
Score = 35.9 bits (79), Expect = 0.033
Identities = 13/16 (81%), Positives = 14/16 (87%)
Frame = -2
Query: 673 VNCNTTHYRANWGTGA 626
VNCNTTHYRANW + A
Sbjct: 637 VNCNTTHYRANWSSTA 652
>SB_17217| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 63
Score = 35.9 bits (79), Expect = 0.033
Identities = 13/16 (81%), Positives = 14/16 (87%)
Frame = -2
Query: 673 VNCNTTHYRANWGTGA 626
VNCNTTHYRANW + A
Sbjct: 48 VNCNTTHYRANWSSTA 63
>SB_12571| Best HMM Match : SBF (HMM E-Value=1.6e-37)
Length = 257
Score = 35.9 bits (79), Expect = 0.033
Identities = 13/16 (81%), Positives = 14/16 (87%)
Frame = -2
Query: 673 VNCNTTHYRANWGTGA 626
VNCNTTHYRANW + A
Sbjct: 10 VNCNTTHYRANWSSTA 25
>SB_510| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1907
Score = 35.9 bits (79), Expect = 0.033
Identities = 13/16 (81%), Positives = 14/16 (87%)
Frame = -2
Query: 673 VNCNTTHYRANWGTGA 626
VNCNTTHYRANW + A
Sbjct: 1888 VNCNTTHYRANWSSTA 1903
>SB_55621| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 206
Score = 35.9 bits (79), Expect = 0.033
Identities = 13/16 (81%), Positives = 14/16 (87%)
Frame = -2
Query: 673 VNCNTTHYRANWGTGA 626
VNCNTTHYRANW + A
Sbjct: 48 VNCNTTHYRANWSSTA 63
>SB_46370| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 204
Score = 35.9 bits (79), Expect = 0.033
Identities = 13/16 (81%), Positives = 14/16 (87%)
Frame = -2
Query: 673 VNCNTTHYRANWGTGA 626
VNCNTTHYRANW + A
Sbjct: 10 VNCNTTHYRANWSSTA 25
>SB_17246| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 602
Score = 35.9 bits (79), Expect = 0.033
Identities = 13/16 (81%), Positives = 14/16 (87%)
Frame = -2
Query: 673 VNCNTTHYRANWGTGA 626
VNCNTTHYRANW + A
Sbjct: 91 VNCNTTHYRANWSSTA 106
>SB_12056| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 119
Score = 35.9 bits (79), Expect = 0.033
Identities = 13/16 (81%), Positives = 14/16 (87%)
Frame = -2
Query: 673 VNCNTTHYRANWGTGA 626
VNCNTTHYRANW + A
Sbjct: 69 VNCNTTHYRANWSSTA 84
>SB_10526| Best HMM Match : CUE (HMM E-Value=6.5)
Length = 281
Score = 35.9 bits (79), Expect = 0.033
Identities = 13/16 (81%), Positives = 14/16 (87%)
Frame = -2
Query: 673 VNCNTTHYRANWGTGA 626
VNCNTTHYRANW + A
Sbjct: 80 VNCNTTHYRANWSSTA 95
>SB_49172| Best HMM Match : UCR_TM (HMM E-Value=9.8)
Length = 142
Score = 31.1 bits (67), Expect = 0.94
Identities = 13/14 (92%), Positives = 13/14 (92%)
Frame = +2
Query: 632 GTPIRPIVSRITIH 673
G PIRPIVSRITIH
Sbjct: 37 GAPIRPIVSRITIH 50
>SB_1601| Best HMM Match : RuvB_C (HMM E-Value=3.6)
Length = 237
Score = 30.3 bits (65), Expect = 1.6
Identities = 11/11 (100%), Positives = 11/11 (100%)
Frame = -2
Query: 673 VNCNTTHYRAN 641
VNCNTTHYRAN
Sbjct: 87 VNCNTTHYRAN 97
>SB_37618| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 73
Score = 30.3 bits (65), Expect = 1.6
Identities = 11/11 (100%), Positives = 11/11 (100%)
Frame = -2
Query: 673 VNCNTTHYRAN 641
VNCNTTHYRAN
Sbjct: 30 VNCNTTHYRAN 40
>SB_51122| Best HMM Match : UCR_TM (HMM E-Value=5.5)
Length = 131
Score = 29.1 bits (62), Expect = 3.8
Identities = 12/14 (85%), Positives = 12/14 (85%)
Frame = +2
Query: 632 GTPIRPIVSRITIH 673
G PIRPIVS ITIH
Sbjct: 39 GAPIRPIVSHITIH 52
>SB_28728| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 92
Score = 29.1 bits (62), Expect = 3.8
Identities = 14/20 (70%), Positives = 15/20 (75%)
Frame = +2
Query: 641 IRPIVSRITIHLGRRLQRRD 700
IRPIVSRITIH +RRD
Sbjct: 18 IRPIVSRITIHWPSFYKRRD 37
>SB_47621| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 591
Score = 28.3 bits (60), Expect = 6.6
Identities = 17/46 (36%), Positives = 28/46 (60%), Gaps = 4/46 (8%)
Frame = -3
Query: 501 ALRCHVLNRLRP--LNRV--IKSNTPAHDKDCWQTPLWLFDALDIE 376
AL HVL+ RP LN + + S++PA D P++++D +D+E
Sbjct: 118 ALTQHVLHPTRPASLNTLDLVLSSSPALVSDVRILPVYMYDKMDVE 163
>SB_20601| Best HMM Match : F5_F8_type_C (HMM E-Value=9.5e-24)
Length = 405
Score = 28.3 bits (60), Expect = 6.6
Identities = 16/61 (26%), Positives = 26/61 (42%)
Frame = +3
Query: 129 LSRALLNHPTDISSGTSITTVCRCCMHCSAAFSTHGLILLYGGYSRLHRGLSTQNLARRQ 308
++ + N T + + IT V CCM S A+ G + GG++ S Q +
Sbjct: 1 MASTVFNADTKVIASLFITAVFLCCMQSSEAWLWSGKKKINGGWNAWSSWTSCQEGTGKD 60
Query: 309 P 311
P
Sbjct: 61 P 61
>SB_14165| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1837
Score = 28.3 bits (60), Expect = 6.6
Identities = 14/43 (32%), Positives = 23/43 (53%)
Frame = -2
Query: 244 NIRPWVEKAAEQCIQQRQTVVMLVPEDMSVGWFSKALESVDEV 116
N P+V A Q ++ + VV + + +V WF K S+DE+
Sbjct: 199 NGAPFVLIIANQSVRNDKEVVFHLENEANVTWFLKTNASLDEI 241
>SB_6355| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 897
Score = 28.3 bits (60), Expect = 6.6
Identities = 16/60 (26%), Positives = 28/60 (46%)
Frame = -1
Query: 590 VKRQGGQGVANAFRQASKHFARADFIESSTPCAAMYSTDFVH*TGLSNQIRQHTTRTAGK 411
VKR G + + ++ + + F R + ++ C Y DF+ G S + T+T GK
Sbjct: 199 VKRGGAKSQSAPWKASMRVFGRKEGSDAFVNCVVSYVADFLRNRGTSRSL--GLTKTRGK 256
>SB_34582| Best HMM Match : PAP2 (HMM E-Value=0.013)
Length = 279
Score = 27.9 bits (59), Expect = 8.8
Identities = 9/31 (29%), Positives = 17/31 (54%)
Frame = -3
Query: 333 LCAHWLTEADDALNSEWISHGAIWNNHRTAI 241
+C W+ E L+ WI+ A+++NH +
Sbjct: 204 VCGPWINEKFAMLHVAWITWAALYSNHHYGV 234
>SB_5478| Best HMM Match : NDT80_PhoG (HMM E-Value=3.6e-21)
Length = 781
Score = 27.9 bits (59), Expect = 8.8
Identities = 14/39 (35%), Positives = 18/39 (46%)
Frame = +3
Query: 93 IRPSVIMRTSSTLSRALLNHPTDISSGTSITTVCRCCMH 209
+RP M T S S L + P + TS C+CC H
Sbjct: 584 VRPGTPMGTGSQTSAPLGSDPYLSKTPTSSINRCKCCGH 622
>SB_14684| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 323
Score = 27.9 bits (59), Expect = 8.8
Identities = 9/31 (29%), Positives = 17/31 (54%)
Frame = -3
Query: 333 LCAHWLTEADDALNSEWISHGAIWNNHRTAI 241
+C W+ E L+ WI+ A+++NH +
Sbjct: 248 VCGPWINEKFAMLHVAWITWAALYSNHHYGV 278
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,759,249
Number of Sequences: 59808
Number of extensions: 544428
Number of successful extensions: 1706
Number of sequences better than 10.0: 27
Number of HSP's better than 10.0 without gapping: 1615
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1705
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1913853903
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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