Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0354
         (719 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z49868-1|CAA90031.1|  106|Caenorhabditis elegans Hypothetical pr...    29   4.4  
AF042387-1|AAC08938.1|  106|Caenorhabditis elegans FMRFamide-lik...    29   4.4  
AF003740-1|AAM15561.2|  488|Caenorhabditis elegans Hypothetical ...    29   4.4  

>Z49868-1|CAA90031.1|  106|Caenorhabditis elegans Hypothetical
           protein W07E11.3a protein.
          Length = 106

 Score = 28.7 bits (61), Expect = 4.4
 Identities = 18/41 (43%), Positives = 25/41 (60%), Gaps = 1/41 (2%)
 Frame = -2

Query: 577 AVRVSPMRFVRPVSTLPGPTS-*RVLRLALPCTQQTSSTEP 458
           AV VSP +FV+P   LP PTS  ++LR  L   + T+  +P
Sbjct: 16  AVIVSPFQFVQPKRILPIPTSRDQLLRGQLAYLKGTTVAQP 56


>AF042387-1|AAC08938.1|  106|Caenorhabditis elegans FMRFamide-like
           peptide 2a protein.
          Length = 106

 Score = 28.7 bits (61), Expect = 4.4
 Identities = 18/41 (43%), Positives = 25/41 (60%), Gaps = 1/41 (2%)
 Frame = -2

Query: 577 AVRVSPMRFVRPVSTLPGPTS-*RVLRLALPCTQQTSSTEP 458
           AV VSP +FV+P   LP PTS  ++LR  L   + T+  +P
Sbjct: 16  AVIVSPFQFVQPKRILPIPTSRDQLLRGQLAYLKGTTVAQP 56


>AF003740-1|AAM15561.2|  488|Caenorhabditis elegans Hypothetical
           protein C41D11.3 protein.
          Length = 488

 Score = 28.7 bits (61), Expect = 4.4
 Identities = 12/34 (35%), Positives = 22/34 (64%)
 Frame = -2

Query: 634 TGAPPSSPAAIVKGSLSAKAVRVSPMRFVRPVST 533
           T + P++P    +GS S+   +VSP  F++P++T
Sbjct: 67  TPSLPTAPLLSRQGSTSSLRFKVSPSTFLKPIAT 100


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,738,753
Number of Sequences: 27780
Number of extensions: 401608
Number of successful extensions: 1074
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1011
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1071
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1687292480
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)