Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0354
         (719 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g66640.1 68418.m08399 LIM domain-containing protein-related c...    33   0.14 
At3g60350.1 68416.m06749 armadillo/beta-catenin repeat family pr...    30   1.3  
At2g44900.1 68415.m05589 armadillo/beta-catenin repeat family pr...    29   2.3  
At2g30200.1 68415.m03672 expressed protein                             29   2.3  
At1g41650.1 68414.m04798 hypothetical protein                          29   3.1  
At5g61390.1 68418.m07702 exonuclease family protein contains exo...    28   5.4  
At3g55160.1 68416.m06126 expressed protein                             28   5.4  
At5g06120.1 68418.m00680 Ran-binding protein, putative similar t...    27   9.5  
At3g58350.1 68416.m06504 meprin and TRAF homology domain-contain...    27   9.5  
At3g50370.1 68416.m05508 expressed protein                             27   9.5  
At3g17360.1 68416.m02218 kinesin motor protein-related similar t...    27   9.5  
At2g42470.1 68415.m05254 meprin and TRAF homology domain-contain...    27   9.5  
At2g31400.1 68415.m03837 pentatricopeptide (PPR) repeat-containi...    27   9.5  
At2g30140.1 68415.m03668 UDP-glucoronosyl/UDP-glucosyl transfera...    27   9.5  

>At5g66640.1 68418.m08399 LIM domain-containing protein-related
           contains low similarity to Pfam profile PF00412: LIM
           domain
          Length = 450

 Score = 33.5 bits (73), Expect = 0.14
 Identities = 11/29 (37%), Positives = 16/29 (55%)
 Frame = +3

Query: 156 TDISSGTSITTVCRCCMHCSAAFSTHGLI 242
           ++I  GTS+   C CC HC   F  H ++
Sbjct: 84  SEIGDGTSVNPRCLCCFHCHRPFVMHEIL 112


>At3g60350.1 68416.m06749 armadillo/beta-catenin repeat family
           protein / F-box family protein contains Pfam profiles
           PF00514: Armadillo/beta-catenin-like repeat, PF00646:
           F-box domain; similar to F-box protein FBL2 (GI:6010699)
           [Rattus norvegicus]
          Length = 928

 Score = 30.3 bits (65), Expect = 1.3
 Identities = 16/37 (43%), Positives = 23/37 (62%)
 Frame = +3

Query: 540 TGLTKRIGDTLTALALNEPLTMAAGLEGGAPVPQFAL 650
           TGL +R+   L  L+++E  ++A G EGG P P  AL
Sbjct: 659 TGLQERVAGALWGLSVSEANSIAIGHEGGIP-PLIAL 694


>At2g44900.1 68415.m05589 armadillo/beta-catenin repeat family
           protein / F-box family protein contains similarity to
           F-box protein FBL2 GI:6010699 from [Rattus norvegicus];
           contains Pfam profiles PF00514:
           Armadillo/beta-catenin-like repeat, PF00646: F-box
           domain
          Length = 930

 Score = 29.5 bits (63), Expect = 2.3
 Identities = 16/37 (43%), Positives = 22/37 (59%)
 Frame = +3

Query: 540 TGLTKRIGDTLTALALNEPLTMAAGLEGGAPVPQFAL 650
           TGL +R    L  L+++E  ++A G EGG P P  AL
Sbjct: 668 TGLQERAAGALWGLSVSEANSVAIGREGGVP-PLIAL 703


>At2g30200.1 68415.m03672 expressed protein
          Length = 393

 Score = 29.5 bits (63), Expect = 2.3
 Identities = 10/19 (52%), Positives = 16/19 (84%)
 Frame = +3

Query: 504 RTLYEVGPGKVLTGLTKRI 560
           ++ YE+GPGKV+ G+ KR+
Sbjct: 364 KSSYELGPGKVIAGIFKRV 382


>At1g41650.1 68414.m04798 hypothetical protein
          Length = 178

 Score = 29.1 bits (62), Expect = 3.1
 Identities = 22/89 (24%), Positives = 40/89 (44%)
 Frame = +3

Query: 9   LMNGRQISSMEPLLFPFFSSPVDGSIKLIRPSVIMRTSSTLSRALLNHPTDISSGTSITT 188
           L +G  ++ ++PL+   F++P D +  +  PS     SS ++    +H T  S  +S +T
Sbjct: 59  LSSGHSMTLLDPLVEYHFATPPDNTRPITLPSYSTPWSSIITHHHQHHSTGHSITSSQST 118

Query: 189 VCRCCMHCSAAFSTHGLILLYGGYSRLHR 275
             R      +     G   ++G    LHR
Sbjct: 119 QIRTQPEKLSTREGRGEDKVFGSGLDLHR 147


>At5g61390.1 68418.m07702 exonuclease family protein contains
           exonuclease domain, Pfam:PF00929
          Length = 487

 Score = 28.3 bits (60), Expect = 5.4
 Identities = 11/40 (27%), Positives = 21/40 (52%)
 Frame = +3

Query: 72  VDGSIKLIRPSVIMRTSSTLSRALLNHPTDISSGTSITTV 191
           ++ S+    P    R   T+ ++ L  PTD  +G ++TT+
Sbjct: 198 IENSVTTTTPETSSRRRRTIKKSPLQSPTDQQTGENMTTI 237


>At3g55160.1 68416.m06126 expressed protein
          Length = 2149

 Score = 28.3 bits (60), Expect = 5.4
 Identities = 15/41 (36%), Positives = 26/41 (63%), Gaps = 1/41 (2%)
 Frame = -2

Query: 553 FVRP-VSTLPGPTS*RVLRLALPCTQQTSSTEPGYQIKYAS 434
           F+ P  S+LP P    +++ A+P   ++SST  G+Q+K+ S
Sbjct: 680 FLNPKTSSLPSPLELYLMKEAVPLNMRSSST--GFQMKWTS 718


>At5g06120.1 68418.m00680 Ran-binding protein, putative similar to
           SP|Q9UIA9 Ran-binding protein 16 {Homo sapiens};
           contains Pfam profile PF03810: Importin-beta N-terminal
           domain
          Length = 1066

 Score = 27.5 bits (58), Expect = 9.5
 Identities = 16/44 (36%), Positives = 23/44 (52%), Gaps = 2/44 (4%)
 Frame = -1

Query: 506 STPCAAMYSTDFVH*T--GLSNQIRQHTTRTAGKRRFGFLMHWI 381
           STP  +M+ TD V     GL   +R     T+ +R +GFL  W+
Sbjct: 697 STP-DSMFRTDAVKFALIGLMRDLRGIAMATSSRRSYGFLFDWL 739


>At3g58350.1 68416.m06504 meprin and TRAF homology domain-containing
           protein / MATH domain-containing protein similar to
           ubiquitin-specific protease 12 [Arabidopsis thaliana]
           GI:11993471; contains Pfam profile PF00917: MATH domain
          Length = 301

 Score = 27.5 bits (58), Expect = 9.5
 Identities = 14/48 (29%), Positives = 24/48 (50%), Gaps = 1/48 (2%)
 Frame = +2

Query: 71  CRWFDKINPSISDNANFVDTLQSLAEPSD*HILWNKH-NYRLSLLYAL 211
           C+W  +  P   +NAN +     +A P+     W +H  +RL+L+  L
Sbjct: 34  CKWHLRAYPKGYNNANSLSLFLGVAVPTSLPSGWRRHTKFRLTLVNQL 81


>At3g50370.1 68416.m05508 expressed protein
          Length = 2179

 Score = 27.5 bits (58), Expect = 9.5
 Identities = 16/41 (39%), Positives = 22/41 (53%), Gaps = 1/41 (2%)
 Frame = -3

Query: 312 EADDALNSEWISHGAI-WNNHRTAISGRGWKKPLSSAYNSD 193
           E  D+  S + S G I  +  R A SG GW KP ++A + D
Sbjct: 56  ERVDSSGSSFHSGGGIAGSGTRPASSGIGWSKPAATATDGD 96


>At3g17360.1 68416.m02218 kinesin motor protein-related similar to
            KLP2 protein GB:CAA63826 from [Xenopus laevis]
          Length = 2008

 Score = 27.5 bits (58), Expect = 9.5
 Identities = 10/22 (45%), Positives = 18/22 (81%)
 Frame = -2

Query: 241  IRPWVEKAAEQCIQQRQTVVML 176
            I  +VEKAA+ CI++ +T+++L
Sbjct: 950  IGDYVEKAAKNCIKKEETILLL 971


>At2g42470.1 68415.m05254 meprin and TRAF homology domain-containing
           protein / MATH domain-containing protein contains Pfam
           profile PF00917: MATH domain
          Length = 898

 Score = 27.5 bits (58), Expect = 9.5
 Identities = 14/62 (22%), Positives = 24/62 (38%)
 Frame = +2

Query: 71  CRWFDKINPSISDNANFVDTLQSLAEPSD*HILWNKHNYRLSLLYALLSGFFHPRPDIAV 250
           C W+ K  P  S + N++    S  +P    + W +      +L        H  P+I  
Sbjct: 516 CNWYIKFYPKGSADDNYLSLFLSPDDPKSLGLNWKRRANFYFVLLNQSGKELHRTPEIGD 575

Query: 251 RW 256
           +W
Sbjct: 576 QW 577


>At2g31400.1 68415.m03837 pentatricopeptide (PPR) repeat-containing
           protein low similarity to fertility restorer [Petunia x
           hybrida] GI:22128587, post-transcriptional control of
           chloroplast gene expression CRP1 [Zea mays] GI:3289002;
           contains Pfam profile PF01535: PPR repeat
          Length = 918

 Score = 27.5 bits (58), Expect = 9.5
 Identities = 21/61 (34%), Positives = 27/61 (44%)
 Frame = -2

Query: 634 TGAPPSSPAAIVKGSLSAKAVRVSPMRFVRPVSTLPGPTS*RVLRLALPCTQQTSSTEPG 455
           T APPSS A++    LS      SP++   P S   G  S R +  A    +QT    P 
Sbjct: 30  TSAPPSSSASVSSAHLSQTTPNFSPLQ--TPKSDFSGRQSTRFVSPATNNHRQTRQ-NPN 86

Query: 454 Y 452
           Y
Sbjct: 87  Y 87


>At2g30140.1 68415.m03668 UDP-glucoronosyl/UDP-glucosyl transferase
           family protein contains Pfam profile: PF00201
           UDP-glucoronosyl and UDP-glucosyl transferase
          Length = 455

 Score = 27.5 bits (58), Expect = 9.5
 Identities = 11/27 (40%), Positives = 17/27 (62%)
 Frame = -1

Query: 83  RTIDRAGEEGKQQRLHAADLATVHQSS 3
           R +DR  EEGK+ R  A DL+ + + +
Sbjct: 407 RFMDRESEEGKEMRRRACDLSEISRGA 433


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,031,872
Number of Sequences: 28952
Number of extensions: 380207
Number of successful extensions: 985
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 960
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 985
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1565336320
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)