Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0352
         (537 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC4B3.17 |cbp3||ubiquinol cytochrome-c reductase assembly prot...    28   1.0  
SPCC31H12.06 |mug111||sequence orphan|Schizosaccharomyces pombe|...    27   1.8  
SPAC3H8.09c |nab3||poly|Schizosaccharomyces pombe|chr 1|||Manual       25   7.2  
SPBC16C6.02c |vps1302|vps13b|chorein homolog|Schizosaccharomyces...    25   9.5  

>SPCC4B3.17 |cbp3||ubiquinol cytochrome-c reductase assembly protein
           Cbp3|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 283

 Score = 27.9 bits (59), Expect = 1.0
 Identities = 17/43 (39%), Positives = 21/43 (48%)
 Frame = -1

Query: 171 FLENVSL*KQLYHQEAPTDQKIYSANATARTSYLNSQTQATNE 43
           FL+ +SL  Q Y   +P     Y A  TAR  Y  +  QAT E
Sbjct: 76  FLKKISLIYQKYI--SPKQNLYYEATGTARYMYFEAARQATPE 116


>SPCC31H12.06 |mug111||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 468

 Score = 27.1 bits (57), Expect = 1.8
 Identities = 14/30 (46%), Positives = 17/30 (56%)
 Frame = -2

Query: 224 ITALSGFGPQ*NNRKSSFFLKMYLYENSFI 135
           +  +SG GP  N    S   K+Y YENSFI
Sbjct: 130 LLGISGTGPSLNASYKSL-CKLYSYENSFI 158


>SPAC3H8.09c |nab3||poly|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 738

 Score = 25.0 bits (52), Expect = 7.2
 Identities = 15/45 (33%), Positives = 21/45 (46%)
 Frame = -3

Query: 148 KTALSPRSAHGSENLLCERYCQNVVLKFTDTSHKRVHSSL*YEVR 14
           +T  SP SA+  ENL      QNV     + + K +  +L  E R
Sbjct: 295 QTPSSPESAYSPENLQLNHEAQNVEYLGNNAAEKSLQMNLEDEQR 339


>SPBC16C6.02c |vps1302|vps13b|chorein homolog|Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 3131

 Score = 24.6 bits (51), Expect = 9.5
 Identities = 9/26 (34%), Positives = 17/26 (65%)
 Frame = -1

Query: 537  KLMAVKVSFHDIFLNWLFSLGRFWRR 460
            ++  ++VS HD+  + LF+   FW+R
Sbjct: 2947 QISGLRVSEHDLNSSCLFTFAVFWQR 2972


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,194,383
Number of Sequences: 5004
Number of extensions: 44009
Number of successful extensions: 117
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 113
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 117
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 222442660
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)