Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0352
         (537 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_03_0192 + 17755807-17755941,17756023-17756235,17758003-177580...    30   1.0  
01_06_0959 - 33362810-33363125,33363309-33363475,33363583-333644...    29   2.3  
10_08_0946 - 21742295-21742933                                         27   7.2  
10_07_0077 + 12645091-12646750,12647612-12648273                       27   9.5  
03_05_1154 + 30803983-30806047,30806152-30806968,30807362-308076...    27   9.5  

>06_03_0192 +
           17755807-17755941,17756023-17756235,17758003-17758086,
           17759280-17759948
          Length = 366

 Score = 30.3 bits (65), Expect = 1.0
 Identities = 12/32 (37%), Positives = 17/32 (53%)
 Frame = +3

Query: 117 PWALLGDKAVFIEIHFQEKRRFPVILLGAEPG 212
           PW++L   A F   HF  +R  P++ LG   G
Sbjct: 306 PWSILVSAAAFALAHFNAQRVMPLVFLGVVMG 337


>01_06_0959 -
           33362810-33363125,33363309-33363475,33363583-33364410,
           33364483-33364719,33365455-33365871,33365951-33366412,
           33367197-33367382
          Length = 870

 Score = 29.1 bits (62), Expect = 2.3
 Identities = 14/59 (23%), Positives = 31/59 (52%)
 Frame = +1

Query: 268 SANKNNRATMDRRLIALLAVAAHLSCMTPVRAQGNLLTQTVYGFLDFTTTIGNTGNGVL 444
           S N     +++++++++      LS ++ +R  GNLL   V+G   F T + +  +G +
Sbjct: 496 SQNSAPSLSLNQKILSVTGPPVTLSVVSRIRNGGNLLKGAVHGAAAFATGVSSPISGAI 554


>10_08_0946 - 21742295-21742933
          Length = 212

 Score = 27.5 bits (58), Expect = 7.2
 Identities = 15/37 (40%), Positives = 20/37 (54%)
 Frame = +1

Query: 286 RATMDRRLIALLAVAAHLSCMTPVRAQGNLLTQTVYG 396
           R  +DRRL+AL+ VA  L+ +    A  NLL     G
Sbjct: 114 RRLLDRRLVALVFVALVLADLAAAGAIANLLAALAVG 150


>10_07_0077 + 12645091-12646750,12647612-12648273
          Length = 773

 Score = 27.1 bits (57), Expect = 9.5
 Identities = 14/33 (42%), Positives = 16/33 (48%)
 Frame = +1

Query: 307 LIALLAVAAHLSCMTPVRAQGNLLTQTVYGFLD 405
           L+ LLA AAH        A GN  T T   F+D
Sbjct: 9   LVLLLAAAAHPIAFADAGAAGNATTTTYIVFMD 41


>03_05_1154 +
           30803983-30806047,30806152-30806968,30807362-30807655,
           30808214-30808451
          Length = 1137

 Score = 27.1 bits (57), Expect = 9.5
 Identities = 15/53 (28%), Positives = 27/53 (50%)
 Frame = +1

Query: 265 NSANKNNRATMDRRLIALLAVAAHLSCMTPVRAQGNLLTQTVYGFLDFTTTIG 423
           +S+  NNRAT  R   A    +A +   TP+ AQ +   +      D+++++G
Sbjct: 2   SSSRSNNRATCSRSSSARSKHSARVVAQTPMDAQLHAEFEGSQRHFDYSSSVG 54


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,483,637
Number of Sequences: 37544
Number of extensions: 297500
Number of successful extensions: 627
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 617
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 627
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1186491600
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)