Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0352
         (537 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_51107| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.2  
SB_47153| Best HMM Match : CCG (HMM E-Value=3.4)                       28   4.2  
SB_31378| Best HMM Match : Herpes_UL55 (HMM E-Value=4.5)               28   4.2  
SB_44671| Best HMM Match : 7tm_1 (HMM E-Value=1.7e-26)                 28   5.6  
SB_35108| Best HMM Match : AT_hook (HMM E-Value=0.15)                  27   7.3  
SB_33678| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   7.3  

>SB_51107| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 466

 Score = 28.7 bits (61), Expect = 3.2
 Identities = 9/29 (31%), Positives = 20/29 (68%)
 Frame = -3

Query: 121 HGSENLLCERYCQNVVLKFTDTSHKRVHS 35
           + +E  + E +C +++  F++TSH R+H+
Sbjct: 224 YNNEQQMLEMHCLSLLWNFSETSHDRLHA 252


>SB_47153| Best HMM Match : CCG (HMM E-Value=3.4)
          Length = 328

 Score = 28.3 bits (60), Expect = 4.2
 Identities = 13/30 (43%), Positives = 17/30 (56%)
 Frame = +3

Query: 321 GGGRPFKLYDTSTSTRKSPHSDCLWILGLH 410
           GGG+  K Y T+T T   PH+D +  L  H
Sbjct: 239 GGGQKSKTYFTATFTVTFPHADDVCYLAYH 268


>SB_31378| Best HMM Match : Herpes_UL55 (HMM E-Value=4.5)
          Length = 690

 Score = 28.3 bits (60), Expect = 4.2
 Identities = 12/26 (46%), Positives = 17/26 (65%)
 Frame = +3

Query: 450 QSSASARTAQD*KASSRKYHETKPSP 527
           Q+  S R A D   S++K+H+T PSP
Sbjct: 318 QTLLSLRVASDKPFSAQKWHQTNPSP 343


>SB_44671| Best HMM Match : 7tm_1 (HMM E-Value=1.7e-26)
          Length = 298

 Score = 27.9 bits (59), Expect = 5.6
 Identities = 13/29 (44%), Positives = 17/29 (58%)
 Frame = +3

Query: 330 RPFKLYDTSTSTRKSPHSDCLWILGLHDN 416
           +PFKL+ +STS +       LWILG   N
Sbjct: 115 KPFKLHGSSTSKKLKVIIPTLWILGCSFN 143


>SB_35108| Best HMM Match : AT_hook (HMM E-Value=0.15)
          Length = 1600

 Score = 27.5 bits (58), Expect = 7.3
 Identities = 14/31 (45%), Positives = 19/31 (61%), Gaps = 1/31 (3%)
 Frame = +3

Query: 441  SSPQSSASARTAQD*KASSRKYHE-TKPSPP 530
            S PQ  AS++T QD   +SRK  +  +PS P
Sbjct: 929  SKPQDQASSKTKQDQDQASRKTKQVARPSKP 959


>SB_33678| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1308

 Score = 27.5 bits (58), Expect = 7.3
 Identities = 16/44 (36%), Positives = 22/44 (50%), Gaps = 1/44 (2%)
 Frame = -3

Query: 337  NGRPPPKEQLVGDP*WLCCFYSRCFRID-TLLMLSHFVR*PHYP 209
            +G PP      GDP +L  F   C  +D TLL++S+    P  P
Sbjct: 1018 SGPPPTGPPADGDPEYLSQFMRICICLDLTLLVMSNLKHIPSQP 1061


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,489,740
Number of Sequences: 59808
Number of extensions: 325252
Number of successful extensions: 839
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 745
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 839
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1215643300
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)