Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0352
         (537 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U70854-2|AAO91721.1|  575|Caenorhabditis elegans Hypothetical pr...    29   1.6  
U70854-1|AAB09146.1|  589|Caenorhabditis elegans Hypothetical pr...    29   1.6  
Z81592-9|CAB63315.1|  945|Caenorhabditis elegans Hypothetical pr...    28   4.9  
AY357729-1|AAQ84518.1|  329|Caenorhabditis elegans two-pore K+ c...    28   4.9  
AF083652-1|AAC32863.1|  329|Caenorhabditis elegans putative pota...    28   4.9  
AF025454-3|AAC71151.2|  329|Caenorhabditis elegans Suppressor pr...    28   4.9  
U29535-11|AAK31456.1|  947|Caenorhabditis elegans Hypothetical p...    27   8.6  

>U70854-2|AAO91721.1|  575|Caenorhabditis elegans Hypothetical
           protein F38A5.1b protein.
          Length = 575

 Score = 29.5 bits (63), Expect = 1.6
 Identities = 16/34 (47%), Positives = 19/34 (55%)
 Frame = +1

Query: 349 TPVRAQGNLLTQTVYGFLDFTTTIGNTGNGVLRP 450
           TPV   GN+L  T+ G +DF  T G T   VL P
Sbjct: 500 TPVMIGGNMLAHTILG-VDFNDTTGETKFLVLDP 532


>U70854-1|AAB09146.1|  589|Caenorhabditis elegans Hypothetical
           protein F38A5.1a protein.
          Length = 589

 Score = 29.5 bits (63), Expect = 1.6
 Identities = 16/34 (47%), Positives = 19/34 (55%)
 Frame = +1

Query: 349 TPVRAQGNLLTQTVYGFLDFTTTIGNTGNGVLRP 450
           TPV   GN+L  T+ G +DF  T G T   VL P
Sbjct: 514 TPVMIGGNMLAHTILG-VDFNDTTGETKFLVLDP 546


>Z81592-9|CAB63315.1|  945|Caenorhabditis elegans Hypothetical
           protein T16G1.9 protein.
          Length = 945

 Score = 27.9 bits (59), Expect = 4.9
 Identities = 12/29 (41%), Positives = 18/29 (62%)
 Frame = +1

Query: 193 YWGPNPDNAVIAQNATASKACLF*NSANK 279
           YW PN  ++  A +++ S+  LF  SANK
Sbjct: 750 YWKPNSSSSPNADSSSTSETTLFGMSANK 778


>AY357729-1|AAQ84518.1|  329|Caenorhabditis elegans two-pore K+
           channel protein.
          Length = 329

 Score = 27.9 bits (59), Expect = 4.9
 Identities = 12/28 (42%), Positives = 19/28 (67%), Gaps = 1/28 (3%)
 Frame = -2

Query: 281 FLFALFQNRHAFDAVAFCAITALS-GFG 201
           F+F+ ++N   FDAV +C +T  + GFG
Sbjct: 175 FMFSSYENWTYFDAVYYCFVTLTTIGFG 202


>AF083652-1|AAC32863.1|  329|Caenorhabditis elegans putative
           potassium channel subunitn2P38 protein.
          Length = 329

 Score = 27.9 bits (59), Expect = 4.9
 Identities = 12/28 (42%), Positives = 19/28 (67%), Gaps = 1/28 (3%)
 Frame = -2

Query: 281 FLFALFQNRHAFDAVAFCAITALS-GFG 201
           F+F+ ++N   FDAV +C +T  + GFG
Sbjct: 175 FMFSSYENWTYFDAVYYCFVTLTTIGFG 202


>AF025454-3|AAC71151.2|  329|Caenorhabditis elegans Suppressor
           protein 9 protein.
          Length = 329

 Score = 27.9 bits (59), Expect = 4.9
 Identities = 12/28 (42%), Positives = 19/28 (67%), Gaps = 1/28 (3%)
 Frame = -2

Query: 281 FLFALFQNRHAFDAVAFCAITALS-GFG 201
           F+F+ ++N   FDAV +C +T  + GFG
Sbjct: 175 FMFSSYENWTYFDAVYYCFVTLTTIGFG 202


>U29535-11|AAK31456.1|  947|Caenorhabditis elegans Hypothetical
           protein C25H3.11 protein.
          Length = 947

 Score = 27.1 bits (57), Expect = 8.6
 Identities = 15/47 (31%), Positives = 25/47 (53%)
 Frame = +2

Query: 368 EISSLRLSMDSWTSRQPLAIPVMVFFAPVKRLRQNRPRLKSQFKKIS 508
           E+S +    +    +  L++ V V    V+RLR   PR KS+F ++S
Sbjct: 591 ELSGVSSRWELSPKQHYLSVDVTVNDMSVQRLRSGHPRPKSKFAELS 637


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,334,298
Number of Sequences: 27780
Number of extensions: 255508
Number of successful extensions: 686
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 659
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 686
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1070714938
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)