Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0352
         (537 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g01630.1 68418.m00079 BRCA2 repeat-containing protein low sim...    30   1.1  
At3g45940.1 68416.m04971 alpha-xylosidase, putative strong simil...    29   1.5  
At5g08540.1 68418.m01016 expressed protein similar to unknown pr...    29   2.6  
At4g30870.1 68417.m04383 repair endonuclease family protein cont...    28   4.5  
At1g03990.1 68414.m00385 alcohol oxidase-related low similarity ...    27   6.0  
At4g21390.1 68417.m03090 S-locus lectin protein kinase family pr...    27   7.9  

>At5g01630.1 68418.m00079 BRCA2 repeat-containing protein low
           similarity to breast cancer susceptibility protein
           [Gallus gallus] GI:19568157; contains Pfam profile
           PF00634: BRCA2 repeat
          Length = 1155

 Score = 29.9 bits (64), Expect = 1.1
 Identities = 14/34 (41%), Positives = 21/34 (61%)
 Frame = -3

Query: 160 CISMKTALSPRSAHGSENLLCERYCQNVVLKFTD 59
           CIS   A++PR+ +GS+   C   C NV ++ TD
Sbjct: 647 CIS---AINPRTDNGSQEAHCSDNCSNVKVELTD 677


>At3g45940.1 68416.m04971 alpha-xylosidase, putative strong
           similarity to alpha-xylosidase precursor GI:4163997 from
           [Arabidopsis thaliana]
          Length = 868

 Score = 29.5 bits (63), Expect = 1.5
 Identities = 14/38 (36%), Positives = 15/38 (39%)
 Frame = +3

Query: 318 FGGGRPFKLYDTSTSTRKSPHSDCLWILGLHDNHWQYR 431
           F G  P  + D  TS    P     W LG H   W YR
Sbjct: 263 FAGPSPLNVVDQYTSLIGRPAPMPYWSLGFHQCRWGYR 300


>At5g08540.1 68418.m01016 expressed protein similar to unknown
           protein (pir||T27191)
          Length = 346

 Score = 28.7 bits (61), Expect = 2.6
 Identities = 14/36 (38%), Positives = 20/36 (55%)
 Frame = +2

Query: 374 SSLRLSMDSWTSRQPLAIPVMVFFAPVKRLRQNRPR 481
           SS  L   +  + QP  +P+   FAP+  LRQ RP+
Sbjct: 8   SSQFLQTRTQNNGQPFLLPLTPLFAPLPSLRQLRPK 43


>At4g30870.1 68417.m04383 repair endonuclease family protein
           contains Pfam PF02732 : ERCC4 domain; similar to repair
           endonuclease (TIGR:At5g41150) [Arabidopsis thaliana]
          Length = 661

 Score = 27.9 bits (59), Expect = 4.5
 Identities = 20/54 (37%), Positives = 27/54 (50%), Gaps = 2/54 (3%)
 Frame = +3

Query: 243 IKSVSILKQRE*KQQS-HYGSPTN-CSFGGGRPFKLYDTSTSTRKSPHSDCLWI 398
           I+ V +   R  K +S + GS  N CS G     K    S+S R+ P  DC+WI
Sbjct: 293 IRQVDLEGSRAKKFRSCNDGSTLNPCSSGSSHAVKA--CSSSVRRLPVGDCIWI 344


>At1g03990.1 68414.m00385 alcohol oxidase-related low similarity to
           long chain fatty alcohol oxidase from Candida cloacae
           [GI:6983581], Candida tropicalis [GI:6983594]; Location
           of EST 248L9T7, gb|AA713296
          Length = 758

 Score = 27.5 bits (58), Expect = 6.0
 Identities = 21/54 (38%), Positives = 25/54 (46%)
 Frame = +1

Query: 211 DNAVIAQNATASKACLF*NSANKNNRATMDRRLIALLAVAAHLSCMTPVRAQGN 372
           +NAVI     A K  L  N ANK   +   +R    L VAA LS  T  + Q N
Sbjct: 431 NNAVILTQCKAEKLILADNDANKREESGRRKR---CLGVAASLSHQTRKKLQIN 481


>At4g21390.1 68417.m03090 S-locus lectin protein kinase family
           protein contains Pfam profiles: PF00954 S-locus
           glycoprotein family, PF00069 protein kinase domain,
           PF01453 lectin (probable mannose binding)
          Length = 849

 Score = 27.1 bits (57), Expect = 7.9
 Identities = 12/29 (41%), Positives = 17/29 (58%)
 Frame = +1

Query: 163 FKKKEDFLLFYWGPNPDNAVIAQNATASK 249
           FK+K+D    Y G N D +V+  + T SK
Sbjct: 462 FKRKKDVSGAYCGKNTDTSVVVADLTKSK 490


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,555,317
Number of Sequences: 28952
Number of extensions: 235851
Number of successful extensions: 510
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 499
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 510
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 993966856
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)