Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0348
         (643 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF592538-1|ABQ95984.1|  582|Tribolium castaneum beta-N-acetylglu...    21   6.5  
DQ659251-1|ABG47449.1|  366|Tribolium castaneum chitinase 11 pro...    21   6.5  

>EF592538-1|ABQ95984.1|  582|Tribolium castaneum
           beta-N-acetylglucosaminidase NAG3 protein.
          Length = 582

 Score = 21.4 bits (43), Expect = 6.5
 Identities = 11/33 (33%), Positives = 15/33 (45%)
 Frame = +3

Query: 456 PSLGSDLGKSATTLNFSSRLQSLRRPTRKSWAI 554
           PS G D       ++FS RL+S    T   W +
Sbjct: 541 PSAGDDYDIYTRLVSFSDRLKSRGIRTAAIWPL 573



 Score = 21.0 bits (42), Expect = 8.6
 Identities = 9/16 (56%), Positives = 11/16 (68%)
 Frame = -2

Query: 555 QSPNFSLLDVEATVAL 508
           +SP F  LDV+ TV L
Sbjct: 425 ESPYFEKLDVKVTVQL 440


>DQ659251-1|ABG47449.1|  366|Tribolium castaneum chitinase 11
           protein.
          Length = 366

 Score = 21.4 bits (43), Expect = 6.5
 Identities = 20/62 (32%), Positives = 27/62 (43%), Gaps = 4/62 (6%)
 Frame = -2

Query: 414 AGNSGSSK---SLPSARHR-DLMSLKS*YVAGPNDDGRVSPSTL*FLILGRNLFCSTFSS 247
           +G + +SK   S+P   H   L S  +  V  P   G   P T    +LG N  CS +S 
Sbjct: 234 SGGASASKVTLSVPFYGHSWYLQSTSNHDVGAPATTGIAGPFTQSPGVLGFNEICSFYSD 293

Query: 246 GT 241
            T
Sbjct: 294 WT 295


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 152,432
Number of Sequences: 336
Number of extensions: 3485
Number of successful extensions: 3
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 16448590
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)