Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0348
         (643 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC737.09c |hmt1|SPCC74.08c|ATP-binding cassette-type vacuolar ...    29   0.57 
SPCC1223.02 |nmt1|thi3|no message in thiamine Nmt1|Schizosacchar...    28   1.3  
SPAC20G4.01 ||SPAC22F8.13|CCR4-Not complex subunit Caf16|Schizos...    26   4.0  
SPAC1F7.06 |||ThiJ domain protein|Schizosaccharomyces pombe|chr ...    25   7.0  
SPAC17G6.10 |ssr1||SWI/SNF and RSC complex subunit Ssr1|Schizosa...    25   9.3  

>SPCC737.09c |hmt1|SPCC74.08c|ATP-binding cassette-type vacuolar
           membrane transporter Hmt1|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 830

 Score = 29.1 bits (62), Expect = 0.57
 Identities = 12/26 (46%), Positives = 18/26 (69%)
 Frame = +3

Query: 474 LGKSATTLNFSSRLQSLRRPTRKSWA 551
           LG SA+T NF +   + ++P+ KSWA
Sbjct: 215 LGVSASTSNFGTLKSTSKKPSDKSWA 240


>SPCC1223.02 |nmt1|thi3|no message in thiamine
           Nmt1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 346

 Score = 27.9 bits (59), Expect = 1.3
 Identities = 12/27 (44%), Positives = 16/27 (59%)
 Frame = +1

Query: 508 QGYSRFDVQQGKVGRLLAVGCRCHLTL 588
           QG  R DVQ  ++ RL  +GC C  T+
Sbjct: 174 QGRPRSDVQMLRIDRLANLGCCCFCTI 200


>SPAC20G4.01 ||SPAC22F8.13|CCR4-Not complex subunit
           Caf16|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 280

 Score = 26.2 bits (55), Expect = 4.0
 Identities = 15/46 (32%), Positives = 26/46 (56%), Gaps = 4/46 (8%)
 Frame = -3

Query: 260 QPFLLEHLINDVPEGLSTII----Q*GLASLIKQLFSRALYKGAKI 135
           QP  L+H+  D+P+G  T++      G ++L+K L  ++L K   I
Sbjct: 16  QPLSLDHVTLDLPKGSRTLLVGANGAGKSTLLKLLSGKSLAKAGHI 61


>SPAC1F7.06 |||ThiJ domain protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 251

 Score = 25.4 bits (53), Expect = 7.0
 Identities = 11/21 (52%), Positives = 14/21 (66%)
 Frame = -1

Query: 520 DCSLDEKLRVVADFPRSEPSD 458
           DCSL +KL+ +A   R  PSD
Sbjct: 89  DCSLMKKLKNIARLDRLNPSD 109


>SPAC17G6.10 |ssr1||SWI/SNF and RSC complex subunit
           Ssr1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 527

 Score = 25.0 bits (52), Expect = 9.3
 Identities = 10/22 (45%), Positives = 13/22 (59%)
 Frame = +2

Query: 290 NYKVLGETRPSSFGPATYQDFK 355
           NY V  +TRPS  GP +   F+
Sbjct: 139 NYNVNPDTRPSKIGPPSTSHFQ 160


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,710,384
Number of Sequences: 5004
Number of extensions: 57481
Number of successful extensions: 128
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 126
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 128
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 287744314
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)