Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ce--0348
(643 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_05_0481 + 29361542-29361669,29362091-29362341,29362820-293630... 48 8e-06
07_03_0056 - 12863599-12863715,12864107-12864235,12864322-128644... 31 1.0
01_05_0699 - 24376987-24377154,24377259-24377406,24377530-243776... 31 1.0
06_01_0332 - 2398683-2399316,2399933-2399983,2400455-2400528,240... 29 2.4
05_01_0500 - 4171090-4171191,4171989-4172061,4172376-4172701,417... 28 5.5
05_01_0498 + 4152729-4152820,4153316-4153425,4153840-4153877,415... 28 5.5
03_05_0289 - 22778073-22778587,22780393-22780576 28 5.5
05_04_0059 - 17570271-17571190,17571394-17571469,17571645-17571671 28 7.2
02_01_0099 + 726576-727105,727899-728048,728510-728635,728726-72... 28 7.2
01_03_0145 - 13116302-13116958,13117365-13117430,13117786-131180... 28 7.2
>02_05_0481 + 29361542-29361669,29362091-29362341,29362820-29363002,
29363099-29363206,29363583-29363697,29363781-29364819,
29364904-29365014,29365268-29365326,29366601-29366763,
29367162-29367435,29367530-29367680,29367766-29367877,
29367978-29368143,29368261-29368331,29368474-29368565,
29368721-29368883,29369134-29369205,29369236-29369263,
29369519-29369910,29369991-29370106,29370201-29370498,
29370820-29371139,29371332-29371590,29371985-29372302,
29372423-29372527,29372648-29372776,29374001-29374381,
29374467-29374604,29374949-29375185,29375264-29375569
Length = 2094
Score = 47.6 bits (108), Expect = 8e-06
Identities = 33/85 (38%), Positives = 45/85 (52%), Gaps = 12/85 (14%)
Frame = +2
Query: 359 IRSRCLAEG-RLFEDPEFPAVDRSLYY---KESLDRPIT--WLRPGEI------SDNPQL 502
+R +A+G R F D EFP DRSL+ SL + W+RP +I S P L
Sbjct: 1627 VREALIAKGERNFTDQEFPPDDRSLFVDPMNPSLKLQVVSEWMRPSDIAKEVSISSQPCL 1686
Query: 503 FVKATVASTSNKEKLGDCWLLAAVA 577
F + +S + +LGDCW L+AVA
Sbjct: 1687 FSGSVNSSDVCQGRLGDCWFLSAVA 1711
>07_03_0056 -
12863599-12863715,12864107-12864235,12864322-12864408,
12864657-12864848,12864930-12865106,12865174-12865420,
12865510-12865619,12865751-12865851,12865937-12866000,
12866433-12866522,12866621-12866719,12866817-12866897,
12867197-12867535
Length = 610
Score = 30.7 bits (66), Expect = 1.0
Identities = 17/48 (35%), Positives = 25/48 (52%), Gaps = 1/48 (2%)
Frame = +2
Query: 296 KVLGETRPSSFGPATYQDFKDIRSR-CLAEGRLFEDPEFPAVDRSLYY 436
KV G+T P +GP T D++D + R CL E P ++ S Y+
Sbjct: 173 KVWGKTGPKLYGPTTGDDYRDNQLRFCLLCLAALEAPRVLNLNNSEYF 220
>01_05_0699 -
24376987-24377154,24377259-24377406,24377530-24377645,
24377743-24377925,24377998-24378186,24378273-24378497,
24378514-24378759,24378836-24378983,24379126-24379241,
24379441-24379497,24379735-24379923,24380001-24380150,
24380323-24380404,24380484-24380601,24380713-24380899,
24381044-24381138,24381223-24381277,24381376-24381567,
24381657-24381853,24382534-24382684
Length = 1003
Score = 30.7 bits (66), Expect = 1.0
Identities = 20/73 (27%), Positives = 33/73 (45%), Gaps = 3/73 (4%)
Frame = +2
Query: 317 PSSFGPATYQDFKDIRSRCLAEGRLFEDPE---FPAVDRSLYYKESLDRPITWLRPGEIS 487
P S P + F D R+ C G L F +DR+L K + + ++ G++
Sbjct: 69 PESILPPSANSFGD-RNNCPVPGTLLNTNNMRGFQNLDRALLLKAEAKKILHDIKSGKVE 127
Query: 488 DNPQLFVKATVAS 526
+NP L ++ V S
Sbjct: 128 ENPALLLRFLVIS 140
>06_01_0332 -
2398683-2399316,2399933-2399983,2400455-2400528,
2400685-2400782,2400874-2400956,2401323-2401582
Length = 399
Score = 29.5 bits (63), Expect = 2.4
Identities = 13/27 (48%), Positives = 18/27 (66%)
Frame = +3
Query: 552 IVGCWLPLPLDTSSQVNSFKLSLMIRS 632
+ GCW PLP +SS + LSL++RS
Sbjct: 292 VAGCWRPLPSPSSSTTTA--LSLLLRS 316
>05_01_0500 -
4171090-4171191,4171989-4172061,4172376-4172701,
4173164-4173555,4174521-4174853,4177118-4177209,
4178052-4178111,4178760-4178903,4180142-4180213,
4180345-4180510,4180776-4180923
Length = 635
Score = 28.3 bits (60), Expect = 5.5
Identities = 14/38 (36%), Positives = 24/38 (63%)
Frame = -1
Query: 574 NGSQQPTIAQLFLVGRRSDCSLDEKLRVVADFPRSEPS 461
N Q+P++A++ + + SD S+ EK + D RS+PS
Sbjct: 510 NPDQRPSMAEIAGMLQESDGSVVEKWETLKDAERSKPS 547
>05_01_0498 +
4152729-4152820,4153316-4153425,4153840-4153877,
4154335-4154433,4154461-4157475
Length = 1117
Score = 28.3 bits (60), Expect = 5.5
Identities = 18/51 (35%), Positives = 25/51 (49%), Gaps = 3/51 (5%)
Frame = -1
Query: 640 NRKLLIIRDNLKELTCDEV---SSGNGSQQPTIAQLFLVGRRSDCSLDEKL 497
N K L++ +NL E T E GNG+ ++ LFL G S+D L
Sbjct: 445 NLKYLVLSENLLEGTIPEGLCNGDGNGNGNSSLENLFLAGNDLGGSIDALL 495
>03_05_0289 - 22778073-22778587,22780393-22780576
Length = 232
Score = 28.3 bits (60), Expect = 5.5
Identities = 11/26 (42%), Positives = 15/26 (57%)
Frame = -1
Query: 616 DNLKELTCDEVSSGNGSQQPTIAQLF 539
D TC+E S G+G+ PT+ LF
Sbjct: 206 DEHSTTTCEEASDGDGAGAPTLLNLF 231
>05_04_0059 - 17570271-17571190,17571394-17571469,17571645-17571671
Length = 340
Score = 27.9 bits (59), Expect = 7.2
Identities = 13/39 (33%), Positives = 19/39 (48%)
Frame = +1
Query: 397 RPRVSGRGPQPLLQGEPGQAHHLAQTWGNQRQPSTFRQG 513
RP + R P PL P + + + +Q QPS +R G
Sbjct: 253 RPASAARPPPPLPPAPPQEHSYAYSPYYSQSQPSPYRYG 291
>02_01_0099 +
726576-727105,727899-728048,728510-728635,728726-729714,
729776-729818,730101-730218,730743-730853
Length = 688
Score = 27.9 bits (59), Expect = 7.2
Identities = 22/88 (25%), Positives = 38/88 (43%)
Frame = -1
Query: 589 EVSSGNGSQQPTIAQLFLVGRRSDCSLDEKLRVVADFPRSEPSDGPVQALLVVEAAVHGR 410
E + G+G P + V ++ + ++ + RS P VVEAA HG+
Sbjct: 85 EANVGSGDSSPAVR----VEEEAEVEAEAEVGTAVEPQRSGTLASPTD---VVEAAQHGQ 137
Query: 409 KLGVFEESTFS*APRSYVFEVLIRSRTE 326
+ +S + +PRSY V+ + E
Sbjct: 138 RQQQASQSQQTPSPRSYAAAVVNKREDE 165
>01_03_0145 -
13116302-13116958,13117365-13117430,13117786-13118065,
13118283-13119028
Length = 582
Score = 27.9 bits (59), Expect = 7.2
Identities = 13/26 (50%), Positives = 14/26 (53%), Gaps = 3/26 (11%)
Frame = +2
Query: 71 KNLVSSSESARACY---GRPKWRWEF 139
KN +S AR GRP WRWEF
Sbjct: 107 KNFISKDFHARFFLWRDGRPNWRWEF 132
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,715,129
Number of Sequences: 37544
Number of extensions: 431763
Number of successful extensions: 1108
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1071
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1107
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1584867848
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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