Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ce--0348
(643 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_38608| Best HMM Match : Peptidase_C2 (HMM E-Value=0) 73 2e-13
SB_53237| Best HMM Match : No HMM Matches (HMM E-Value=.) 57 1e-08
SB_31652| Best HMM Match : Peptidase_C2 (HMM E-Value=0) 56 2e-08
SB_54156| Best HMM Match : Peptidase_C2 (HMM E-Value=0) 33 0.20
SB_38450| Best HMM Match : zf-CCHC (HMM E-Value=0.00018) 30 1.4
SB_56078| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.6
SB_31653| Best HMM Match : Peptidase_C2 (HMM E-Value=4.5e-09) 28 5.6
SB_35991| Best HMM Match : Gp-FAR-1 (HMM E-Value=0.88) 28 7.4
SB_3851| Best HMM Match : TSP_1 (HMM E-Value=3.7e-24) 27 9.8
SB_21584| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.8
>SB_38608| Best HMM Match : Peptidase_C2 (HMM E-Value=0)
Length = 842
Score = 72.9 bits (171), Expect = 2e-13
Identities = 34/90 (37%), Positives = 52/90 (57%)
Frame = +2
Query: 356 DIRSRCLAEGRLFEDPEFPAVDRSLYYKESLDRPITWLRPGEISDNPQLFVKATVASTSN 535
D+R + + G+ FED EF A+D S+++ + RP W RP +I ++P +FV
Sbjct: 198 DVRRQVRSTGKPFEDDEFLAIDSSIFFSKRPPRPFEWKRPSDICEDPHMFVGGASRLDIQ 257
Query: 536 KEKLGDCWLLAAVAT*HFIAS*FFQVVPDD 625
+ LGDCWLLAA+A ++ +VVP D
Sbjct: 258 QGMLGDCWLLAAIAALTQHSALMNKVVPQD 287
>SB_53237| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 825
Score = 56.8 bits (131), Expect = 1e-08
Identities = 32/99 (32%), Positives = 47/99 (47%), Gaps = 3/99 (3%)
Frame = +2
Query: 344 QDFKDIRSRCLAEGRLFEDPEFPAVDRSLYYKESLD-RPITWLRPGEISDN--PQLFVKA 514
Q + +++ C +LF D F SLYY S P+ W RP EI P LFV
Sbjct: 10 QRYSKLKAECEKNEQLFVDSVFKPETSSLYYSRSCPPEPVEWKRPSEICHPAVPHLFVDG 69
Query: 515 TVASTSNKEKLGDCWLLAAVAT*HFIAS*FFQVVPDDQK 631
+ + KLG+CW +AA ++ ++V+PD K
Sbjct: 70 ADSHDVTQGKLGNCWFVAACSSLALRPFLLYKVIPDKDK 108
>SB_31652| Best HMM Match : Peptidase_C2 (HMM E-Value=0)
Length = 1133
Score = 56.4 bits (130), Expect = 2e-08
Identities = 32/95 (33%), Positives = 49/95 (51%)
Frame = +2
Query: 350 FKDIRSRCLAEGRLFEDPEFPAVDRSLYYKESLDRPITWLRPGEISDNPQLFVKATVAST 529
F ++ + L RLFED +FPA +R L+ + + I W RP EIS +PQ + +S
Sbjct: 12 FASLQRQLLNSKRLFEDRDFPASNRVLFTRRRSVQLI-WKRPHEISKSPQFIARGFSSSD 70
Query: 530 SNKEKLGDCWLLAAVAT*HFIAS*FFQVVPDDQKF 634
+ ++ +CW +AA+A V P DQ F
Sbjct: 71 VAQGRIRNCWFVAALADLTTNIDLLHHVCPPDQSF 105
>SB_54156| Best HMM Match : Peptidase_C2 (HMM E-Value=0)
Length = 1001
Score = 33.1 bits (72), Expect = 0.20
Identities = 27/80 (33%), Positives = 34/80 (42%), Gaps = 11/80 (13%)
Frame = +2
Query: 371 CLAEGRLFEDPEFPAVDRSLYYK---ESLDRPITWLRPGEISDN--------PQLFVKAT 517
C + F D FP V +SLY R WLRP EI DN P +
Sbjct: 431 CKTQEIQFVDDSFPPVLKSLYINPRHSEHPRVADWLRPNEI-DNFSTCRTNIPWAVFRNP 489
Query: 518 VASTSNKEKLGDCWLLAAVA 577
S + LGDCW L+++A
Sbjct: 490 RPSDIIQGVLGDCWFLSSLA 509
>SB_38450| Best HMM Match : zf-CCHC (HMM E-Value=0.00018)
Length = 1066
Score = 30.3 bits (65), Expect = 1.4
Identities = 21/55 (38%), Positives = 28/55 (50%)
Frame = -1
Query: 574 NGSQQPTIAQLFLVGRRSDCSLDEKLRVVADFPRSEPSDGPVQALLVVEAAVHGR 410
N S QP+ L + GR SLD+ ++ P P DG V L+V E VHG+
Sbjct: 762 NASDQPSPGLLIIGGRLRQASLDDTVK----HPIILPKDGHVTWLIVKE--VHGK 810
>SB_56078| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 198
Score = 28.3 bits (60), Expect = 5.6
Identities = 14/33 (42%), Positives = 17/33 (51%)
Frame = +1
Query: 430 LLQGEPGQAHHLAQTWGNQRQPSTFRQGYSRFD 528
L + E G A TWGN R+P+T R S D
Sbjct: 20 LSEDEDGGPSESAITWGNGREPATVRPFISSSD 52
>SB_31653| Best HMM Match : Peptidase_C2 (HMM E-Value=4.5e-09)
Length = 208
Score = 28.3 bits (60), Expect = 5.6
Identities = 12/33 (36%), Positives = 18/33 (54%)
Frame = +2
Query: 479 EISDNPQLFVKATVASTSNKEKLGDCWLLAAVA 577
EI P+ +V + LG+CWLLAA++
Sbjct: 97 EICSEPRFYVDGASRLDIKQGVLGNCWLLAAMS 129
>SB_35991| Best HMM Match : Gp-FAR-1 (HMM E-Value=0.88)
Length = 669
Score = 27.9 bits (59), Expect = 7.4
Identities = 12/22 (54%), Positives = 13/22 (59%)
Frame = -1
Query: 154 CIRAPKFPPPFWPAIASSRTFT 89
C RAPK PPP A+A R T
Sbjct: 482 CARAPKMPPPERQALARLRAHT 503
>SB_3851| Best HMM Match : TSP_1 (HMM E-Value=3.7e-24)
Length = 429
Score = 27.5 bits (58), Expect = 9.8
Identities = 11/22 (50%), Positives = 14/22 (63%)
Frame = -3
Query: 449 PGSPCSRGCGPRPETRGLRRVY 384
PG CS+ CG +TR LR +Y
Sbjct: 365 PGHGCSKSCGDGVKTRELRCLY 386
>SB_21584| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1750
Score = 27.5 bits (58), Expect = 9.8
Identities = 13/44 (29%), Positives = 26/44 (59%)
Frame = +3
Query: 216 ALGNIINEVFQKKRLNKKGFCPVSRIIKC*AKPARHHSVRLRIR 347
++GN+ NE++ K +L++ P +I A A + V+LR++
Sbjct: 204 SMGNLANELYDKSKLSQTSLLPAIQI----ANFAGNQEVKLRVK 243
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,807,429
Number of Sequences: 59808
Number of extensions: 462499
Number of successful extensions: 898
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 856
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 895
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1620947750
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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