Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ce--0348
(643 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AC024214-10|AAF36080.1| 778|Caenorhabditis elegans Calpain fami... 102 2e-22
L25598-4|AAV58888.1| 737|Caenorhabditis elegans Calpain family ... 93 2e-19
L25598-3|AAM15551.1| 759|Caenorhabditis elegans Calpain family ... 93 2e-19
L25598-2|AAV58887.1| 780|Caenorhabditis elegans Calpain family ... 93 2e-19
AC024214-9|AAF36079.1| 790|Caenorhabditis elegans Calpain famil... 90 1e-18
AC024763-6|AAO12403.1| 603|Caenorhabditis elegans Calpain famil... 88 4e-18
AC024763-5|AAO12402.1| 716|Caenorhabditis elegans Calpain famil... 88 4e-18
AL132848-5|CAB60389.2| 702|Caenorhabditis elegans Hypothetical ... 71 9e-13
Z82277-1|CAB05248.1| 648|Caenorhabditis elegans Hypothetical pr... 63 2e-10
U12921-1|AAB60256.1| 648|Caenorhabditis elegans sex determinati... 63 2e-10
Z81068-6|CAB02986.1| 725|Caenorhabditis elegans Hypothetical pr... 32 0.40
AF040660-1|AAC71148.1| 634|Caenorhabditis elegans Hypothetical ... 31 0.70
AF016683-5|AAB66196.2| 1010|Caenorhabditis elegans Hypothetical ... 30 1.6
AF036706-18|AAK39278.1| 448|Caenorhabditis elegans Enhanced rna... 29 3.7
AF036706-17|AAK39277.2| 582|Caenorhabditis elegans Enhanced rna... 29 3.7
U42439-3|AAA83507.1| 310|Caenorhabditis elegans Hypothetical pr... 28 6.5
>AC024214-10|AAF36080.1| 778|Caenorhabditis elegans Calpain family
protein 7 protein.
Length = 778
Score = 102 bits (245), Expect = 2e-22
Identities = 51/97 (52%), Positives = 60/97 (61%)
Frame = +2
Query: 347 DFKDIRSRCLAEGRLFEDPEFPAVDRSLYYKESLDRPITWLRPGEISDNPQLFVKATVAS 526
+F+ R RCL + LFEDP+FPA D SLYYK D PI W RPGEI +NPQL V
Sbjct: 296 NFQQERQRCLDQRCLFEDPQFPANDSSLYYKTRPDEPIIWKRPGEIYENPQLIVGEKSRF 355
Query: 527 TSNKEKLGDCWLLAAVAT*HFIAS*FFQVVPDDQKFS 637
+ LGDCWLLAAVA F++VVP DQ F+
Sbjct: 356 DVKQGALGDCWLLAAVANLTLRDELFYRVVPPDQSFT 392
>L25598-4|AAV58888.1| 737|Caenorhabditis elegans Calpain family
protein 1, isoform b protein.
Length = 737
Score = 93.1 bits (221), Expect = 2e-19
Identities = 48/108 (44%), Positives = 64/108 (59%), Gaps = 1/108 (0%)
Frame = +2
Query: 317 PSSFGPATY-QDFKDIRSRCLAEGRLFEDPEFPAVDRSLYYKESLDRPITWLRPGEISDN 493
P S P T QDF ++R +CL RLFEDP+F A D SL++ + + + WLRPGEI+
Sbjct: 245 PISPRPTTEPQDFYELRDQCLESKRLFEDPQFLANDSSLFFSKRPPKRVEWLRPGEITRE 304
Query: 494 PQLFVKATVASTSNKEKLGDCWLLAAVAT*HFIAS*FFQVVPDDQKFS 637
PQL + + +LGDCWLLAA A F++VVP DQ F+
Sbjct: 305 PQLITEGHSRFDVIQGELGDCWLLAAAANLTLKDELFYRVVPPDQSFT 352
>L25598-3|AAM15551.1| 759|Caenorhabditis elegans Calpain family
protein 1, isoform d protein.
Length = 759
Score = 93.1 bits (221), Expect = 2e-19
Identities = 48/108 (44%), Positives = 64/108 (59%), Gaps = 1/108 (0%)
Frame = +2
Query: 317 PSSFGPATY-QDFKDIRSRCLAEGRLFEDPEFPAVDRSLYYKESLDRPITWLRPGEISDN 493
P S P T QDF ++R +CL RLFEDP+F A D SL++ + + + WLRPGEI+
Sbjct: 270 PISPRPTTEPQDFYELRDQCLESKRLFEDPQFLANDSSLFFSKRPPKRVEWLRPGEITRE 329
Query: 494 PQLFVKATVASTSNKEKLGDCWLLAAVAT*HFIAS*FFQVVPDDQKFS 637
PQL + + +LGDCWLLAA A F++VVP DQ F+
Sbjct: 330 PQLITEGHSRFDVIQGELGDCWLLAAAANLTLKDELFYRVVPPDQSFT 377
>L25598-2|AAV58887.1| 780|Caenorhabditis elegans Calpain family
protein 1, isoform a protein.
Length = 780
Score = 93.1 bits (221), Expect = 2e-19
Identities = 48/108 (44%), Positives = 64/108 (59%), Gaps = 1/108 (0%)
Frame = +2
Query: 317 PSSFGPATY-QDFKDIRSRCLAEGRLFEDPEFPAVDRSLYYKESLDRPITWLRPGEISDN 493
P S P T QDF ++R +CL RLFEDP+F A D SL++ + + + WLRPGEI+
Sbjct: 291 PISPRPTTEPQDFYELRDQCLESKRLFEDPQFLANDSSLFFSKRPPKRVEWLRPGEITRE 350
Query: 494 PQLFVKATVASTSNKEKLGDCWLLAAVAT*HFIAS*FFQVVPDDQKFS 637
PQL + + +LGDCWLLAA A F++VVP DQ F+
Sbjct: 351 PQLITEGHSRFDVIQGELGDCWLLAAAANLTLKDELFYRVVPPDQSFT 398
>AC024214-9|AAF36079.1| 790|Caenorhabditis elegans Calpain family
protein 6 protein.
Length = 790
Score = 89.8 bits (213), Expect = 1e-18
Identities = 44/96 (45%), Positives = 57/96 (59%)
Frame = +2
Query: 350 FKDIRSRCLAEGRLFEDPEFPAVDRSLYYKESLDRPITWLRPGEISDNPQLFVKATVAST 529
F + R +CL E RLFEDP+FPA + S+YYK+ I WLRP +I NP+L V
Sbjct: 144 FYEERQKCLDENRLFEDPQFPANNSSIYYKKPPKSHIVWLRPAKIFANPRLIVNGKSRFD 203
Query: 530 SNKEKLGDCWLLAAVAT*HFIAS*FFQVVPDDQKFS 637
+ LG+CW LAA AT F++VVP DQ F+
Sbjct: 204 VRQGSLGNCWFLAAAATLAQRDELFYRVVPPDQSFT 239
>AC024763-6|AAO12403.1| 603|Caenorhabditis elegans Calpain family
protein 4, isoform b protein.
Length = 603
Score = 88.2 bits (209), Expect = 4e-18
Identities = 43/97 (44%), Positives = 55/97 (56%)
Frame = +2
Query: 347 DFKDIRSRCLAEGRLFEDPEFPAVDRSLYYKESLDRPITWLRPGEISDNPQLFVKATVAS 526
DF+ R +CL LFEDPEFPA SLYY+ I W RPGEI NPQL +
Sbjct: 226 DFETEREKCLRNKTLFEDPEFPATAASLYYRTPPRDRIIWKRPGEIIANPQLITQGESRF 285
Query: 527 TSNKEKLGDCWLLAAVAT*HFIAS*FFQVVPDDQKFS 637
+ LGDCW LAA+A + F+++VP +Q F+
Sbjct: 286 DVKQGALGDCWFLAALANITLYDALFYRIVPPNQSFT 322
>AC024763-5|AAO12402.1| 716|Caenorhabditis elegans Calpain family
protein 4, isoform a protein.
Length = 716
Score = 88.2 bits (209), Expect = 4e-18
Identities = 43/97 (44%), Positives = 55/97 (56%)
Frame = +2
Query: 347 DFKDIRSRCLAEGRLFEDPEFPAVDRSLYYKESLDRPITWLRPGEISDNPQLFVKATVAS 526
DF+ R +CL LFEDPEFPA SLYY+ I W RPGEI NPQL +
Sbjct: 226 DFETEREKCLRNKTLFEDPEFPATAASLYYRTPPRDRIIWKRPGEIIANPQLITQGESRF 285
Query: 527 TSNKEKLGDCWLLAAVAT*HFIAS*FFQVVPDDQKFS 637
+ LGDCW LAA+A + F+++VP +Q F+
Sbjct: 286 DVKQGALGDCWFLAALANITLYDALFYRIVPPNQSFT 322
>AL132848-5|CAB60389.2| 702|Caenorhabditis elegans Hypothetical
protein Y47H10A.1 protein.
Length = 702
Score = 70.5 bits (165), Expect = 9e-13
Identities = 37/96 (38%), Positives = 50/96 (52%)
Frame = +2
Query: 350 FKDIRSRCLAEGRLFEDPEFPAVDRSLYYKESLDRPITWLRPGEISDNPQLFVKATVAST 529
F + R +CL E RLFEDP+FPA + S+Y K I W RPGE+ NP+L
Sbjct: 202 FHEERQKCLDEKRLFEDPQFPANNSSIYVKVRPKDHIVWKRPGELFANPRLIGSDKTHFD 261
Query: 530 SNKEKLGDCWLLAAVAT*HFIAS*FFQVVPDDQKFS 637
+L + W L+ A F++VVP DQ F+
Sbjct: 262 VKLGRLENRWFLSGAANLSLRDELFYRVVPPDQSFT 297
>Z82277-1|CAB05248.1| 648|Caenorhabditis elegans Hypothetical
protein LLC1.1 protein.
Length = 648
Score = 62.9 bits (146), Expect = 2e-10
Identities = 31/100 (31%), Positives = 55/100 (55%), Gaps = 2/100 (2%)
Frame = +2
Query: 344 QDFKDIRSRCLAEGRLFEDPEFPAVDRSLYYKESLDRPITWLRPGEISDNPQLFVKATVA 523
Q+++ +R C+ + + F D FP ++SL+ ++ I W RPGE+ +P LFV+
Sbjct: 13 QNYEKLRKICIKKKQPFVDTLFPPTNQSLFLEQRQSSDIVWKRPGELHPDPHLFVEGASP 72
Query: 524 STSNKEKLGDCWLLAAVAT*HFIAS*FFQVVP--DDQKFS 637
+ + LG+CW ++A + QV+P DDQ++S
Sbjct: 73 NDVTQGILGNCWFVSACSALTHNFKLLAQVIPDADDQEWS 112
>U12921-1|AAB60256.1| 648|Caenorhabditis elegans sex determination
protein.
Length = 648
Score = 62.9 bits (146), Expect = 2e-10
Identities = 31/100 (31%), Positives = 55/100 (55%), Gaps = 2/100 (2%)
Frame = +2
Query: 344 QDFKDIRSRCLAEGRLFEDPEFPAVDRSLYYKESLDRPITWLRPGEISDNPQLFVKATVA 523
Q+++ +R C+ + + F D FP ++SL+ ++ I W RPGE+ +P LFV+
Sbjct: 13 QNYEKLRKICIKKKQPFVDTLFPPTNQSLFLEQRQSSDIVWKRPGELHPDPHLFVEGASP 72
Query: 524 STSNKEKLGDCWLLAAVAT*HFIAS*FFQVVP--DDQKFS 637
+ + LG+CW ++A + QV+P DDQ++S
Sbjct: 73 NDVTQGILGNCWFVSACSALTHNFKLLAQVIPDADDQEWS 112
>Z81068-6|CAB02986.1| 725|Caenorhabditis elegans Hypothetical
protein F25H5.5 protein.
Length = 725
Score = 31.9 bits (69), Expect = 0.40
Identities = 31/92 (33%), Positives = 42/92 (45%), Gaps = 11/92 (11%)
Frame = +2
Query: 248 EEKVEQKRFLPSIKNYKVLG---------ETRPSS--FGPATYQDFKDIRSRCLAEGRLF 394
E+ V KR LP++KN++VL ET PS FG T +D + I+ C G
Sbjct: 318 EDDVGVKRRLPAVKNHRVLDSDEEDDVIEETLPSQDVFGSGTLEDSETIKEICEKSGEFT 377
Query: 395 EDPEFPAVDRSLYYKESLDRPITWLRPGEISD 490
E ++ L K L R + L GE SD
Sbjct: 378 E-----KIETVLEEKTELKRVV--LSDGEDSD 402
>AF040660-1|AAC71148.1| 634|Caenorhabditis elegans Hypothetical
protein W05G11.4 protein.
Length = 634
Score = 31.1 bits (67), Expect = 0.70
Identities = 17/63 (26%), Positives = 27/63 (42%), Gaps = 6/63 (9%)
Frame = +2
Query: 407 FPAVDRSLYYKESLDRPITWLRPGEISDNP------QLFVKATVASTSNKEKLGDCWLLA 568
FP+ + S+ + WLRP +I +F + +GDCWLL+
Sbjct: 98 FPSTTNGVQCNNSIIDSLHWLRPSQIRTKDGTSCAWSVFNNPQPSDIEQGNLVGDCWLLS 157
Query: 569 AVA 577
A+A
Sbjct: 158 AMA 160
>AF016683-5|AAB66196.2| 1010|Caenorhabditis elegans Hypothetical
protein K09F6.6 protein.
Length = 1010
Score = 29.9 bits (64), Expect = 1.6
Identities = 20/58 (34%), Positives = 29/58 (50%)
Frame = -3
Query: 299 LYNS*YWAETFFVQPFLLEHLINDVPEGLSTIIQ*GLASLIKQLFSRALYKGAKIPTA 126
LY+S Y +E P L + +D + L I + + ++KQL S Y GAKI A
Sbjct: 377 LYSSSYMSERLLSSP--LPYPWDDGYDTLHNIQEGTMKDMLKQLLSNGYYVGAKISVA 432
>AF036706-18|AAK39278.1| 448|Caenorhabditis elegans Enhanced rnai
(rna interference)protein 1, isoform a protein.
Length = 448
Score = 28.7 bits (61), Expect = 3.7
Identities = 24/92 (26%), Positives = 40/92 (43%), Gaps = 1/92 (1%)
Frame = +2
Query: 245 PEEKVEQKRFLPSIKNYKVLGETRPSSFGPATYQDFKDIRSRCLAEGRL-FEDPEFPAVD 421
P E +E L ++ K++ E R TY + +R+ L+E + F VD
Sbjct: 168 PHEIIELPAVLIDVREMKIISEFR-------TY--VRPVRNPKLSEFCMQFTKIAQETVD 218
Query: 422 RSLYYKESLDRPITWLRPGEISDNPQLFVKAT 517
+ Y++E+L R TW+R + F T
Sbjct: 219 AAPYFREALQRLYTWMRKFNLGQKNSRFAFVT 250
>AF036706-17|AAK39277.2| 582|Caenorhabditis elegans Enhanced rnai
(rna interference)protein 1, isoform b protein.
Length = 582
Score = 28.7 bits (61), Expect = 3.7
Identities = 24/92 (26%), Positives = 40/92 (43%), Gaps = 1/92 (1%)
Frame = +2
Query: 245 PEEKVEQKRFLPSIKNYKVLGETRPSSFGPATYQDFKDIRSRCLAEGRL-FEDPEFPAVD 421
P E +E L ++ K++ E R TY + +R+ L+E + F VD
Sbjct: 168 PHEIIELPAVLIDVREMKIISEFR-------TY--VRPVRNPKLSEFCMQFTKIAQETVD 218
Query: 422 RSLYYKESLDRPITWLRPGEISDNPQLFVKAT 517
+ Y++E+L R TW+R + F T
Sbjct: 219 AAPYFREALQRLYTWMRKFNLGQKNSRFAFVT 250
>U42439-3|AAA83507.1| 310|Caenorhabditis elegans Hypothetical
protein F19C7.3 protein.
Length = 310
Score = 27.9 bits (59), Expect = 6.5
Identities = 10/23 (43%), Positives = 13/23 (56%)
Frame = +1
Query: 475 WGNQRQPSTFRQGYSRFDVQQGK 543
W N+R+P F G R D + GK
Sbjct: 259 WDNKRRPRIFCDGIERIDCEDGK 281
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,303,995
Number of Sequences: 27780
Number of extensions: 338328
Number of successful extensions: 948
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 796
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 939
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1427403330
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -