Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ce--0348
(643 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g55350.4 68414.m06326 calpain-type cysteine protease family i... 39 0.003
At1g55350.3 68414.m06325 calpain-type cysteine protease family i... 39 0.003
At1g55350.2 68414.m06324 calpain-type cysteine protease family i... 39 0.003
At1g55350.1 68414.m06323 calpain-type cysteine protease family i... 39 0.003
At5g22300.1 68418.m02601 nitrilase 4 (NIT4) identical to SP|P460... 31 0.86
At3g30310.1 68416.m03827 hypothetical protein 29 3.5
At5g23980.1 68418.m02818 ferric-chelate reductase, putative simi... 28 4.6
At3g50890.1 68416.m05572 zinc finger homeobox family protein / Z... 28 4.6
At2g18350.1 68415.m02138 zinc finger homeobox family protein / Z... 28 4.6
At5g18530.1 68418.m02191 beige/BEACH domain-containing protein c... 28 6.1
At2g46380.1 68415.m05773 hypothetical protein weak similarity to... 28 6.1
At5g08060.1 68418.m00940 expressed protein sigma factor F inhibi... 27 8.0
>At1g55350.4 68414.m06326 calpain-type cysteine protease family
identical to calpain-like protein GI:20268660 from
[Arabidopsis thaliana]; contains Pfam profiles: PF00648
Calpain family cysteine protease, PF01067 Calpain large
subunit,domain III; identical to cDNA calpain-like
protein GI:20268659
Length = 2151
Score = 38.7 bits (86), Expect = 0.003
Identities = 29/73 (39%), Positives = 35/73 (47%), Gaps = 11/73 (15%)
Frame = +2
Query: 392 FEDPEFPAVDRSLYYK-----ESLDRPITWLRPGEI-----SDN-PQLFVKATVASTSNK 538
F D EFP DRSL+ L W+RP I SD+ P LF S +
Sbjct: 1696 FTDQEFPPNDRSLFVDTQNPPSKLQVVSEWMRPDSIVKENGSDSRPCLFSGDANPSDVCQ 1755
Query: 539 EKLGDCWLLAAVA 577
+LGDCW L+AVA
Sbjct: 1756 GRLGDCWFLSAVA 1768
>At1g55350.3 68414.m06325 calpain-type cysteine protease family
identical to calpain-like protein GI:20268660 from
[Arabidopsis thaliana]; contains Pfam profiles: PF00648
Calpain family cysteine protease, PF01067 Calpain large
subunit,domain III; identical to cDNA calpain-like
protein GI:20268659
Length = 2151
Score = 38.7 bits (86), Expect = 0.003
Identities = 29/73 (39%), Positives = 35/73 (47%), Gaps = 11/73 (15%)
Frame = +2
Query: 392 FEDPEFPAVDRSLYYK-----ESLDRPITWLRPGEI-----SDN-PQLFVKATVASTSNK 538
F D EFP DRSL+ L W+RP I SD+ P LF S +
Sbjct: 1696 FTDQEFPPNDRSLFVDTQNPPSKLQVVSEWMRPDSIVKENGSDSRPCLFSGDANPSDVCQ 1755
Query: 539 EKLGDCWLLAAVA 577
+LGDCW L+AVA
Sbjct: 1756 GRLGDCWFLSAVA 1768
>At1g55350.2 68414.m06324 calpain-type cysteine protease family
identical to calpain-like protein GI:20268660 from
[Arabidopsis thaliana]; contains Pfam profiles: PF00648
Calpain family cysteine protease, PF01067 Calpain large
subunit,domain III; identical to cDNA calpain-like
protein GI:20268659
Length = 2151
Score = 38.7 bits (86), Expect = 0.003
Identities = 29/73 (39%), Positives = 35/73 (47%), Gaps = 11/73 (15%)
Frame = +2
Query: 392 FEDPEFPAVDRSLYYK-----ESLDRPITWLRPGEI-----SDN-PQLFVKATVASTSNK 538
F D EFP DRSL+ L W+RP I SD+ P LF S +
Sbjct: 1696 FTDQEFPPNDRSLFVDTQNPPSKLQVVSEWMRPDSIVKENGSDSRPCLFSGDANPSDVCQ 1755
Query: 539 EKLGDCWLLAAVA 577
+LGDCW L+AVA
Sbjct: 1756 GRLGDCWFLSAVA 1768
>At1g55350.1 68414.m06323 calpain-type cysteine protease family
identical to calpain-like protein GI:20268660 from
[Arabidopsis thaliana]; contains Pfam profiles: PF00648
Calpain family cysteine protease, PF01067 Calpain large
subunit,domain III; identical to cDNA calpain-like
protein GI:20268659
Length = 2151
Score = 38.7 bits (86), Expect = 0.003
Identities = 29/73 (39%), Positives = 35/73 (47%), Gaps = 11/73 (15%)
Frame = +2
Query: 392 FEDPEFPAVDRSLYYK-----ESLDRPITWLRPGEI-----SDN-PQLFVKATVASTSNK 538
F D EFP DRSL+ L W+RP I SD+ P LF S +
Sbjct: 1696 FTDQEFPPNDRSLFVDTQNPPSKLQVVSEWMRPDSIVKENGSDSRPCLFSGDANPSDVCQ 1755
Query: 539 EKLGDCWLLAAVA 577
+LGDCW L+AVA
Sbjct: 1756 GRLGDCWFLSAVA 1768
>At5g22300.1 68418.m02601 nitrilase 4 (NIT4) identical to SP|P46011
Nitrilase 4 (EC 3.5.5.1) {Arabidopsis thaliana}
Length = 355
Score = 30.7 bits (66), Expect = 0.86
Identities = 17/37 (45%), Positives = 22/37 (59%)
Frame = -1
Query: 439 LVVEAAVHGRKLGVFEESTFS*APRSYVFEVLIRSRT 329
L+ EAA +G +L VF E+ PR FE+ I SRT
Sbjct: 60 LLSEAAENGSQLVVFPEAFIGGYPRGSTFELAIGSRT 96
>At3g30310.1 68416.m03827 hypothetical protein
Length = 113
Score = 28.7 bits (61), Expect = 3.5
Identities = 12/42 (28%), Positives = 20/42 (47%)
Frame = +1
Query: 220 SGTSLMRCSRRKG*TKKVSAQYQEL*SARRNPPVIIRSGYVS 345
+GT +M C + A Y+ + S NP + + GY+S
Sbjct: 70 TGTQVMGCESKSDSNFLTLASYKRIHSGELNPHIFVGKGYIS 111
>At5g23980.1 68418.m02818 ferric-chelate reductase, putative similar
to ferric-chelate reductase (FRO1) [Pisum sativum]
GI:15341529; contains Pfam profile PF01794: Ferric
reductase like transmembrane component
Length = 699
Score = 28.3 bits (60), Expect = 4.6
Identities = 12/32 (37%), Positives = 20/32 (62%)
Frame = -3
Query: 185 SLIKQLFSRALYKGAKIPTAILACHSKLAHFH 90
S+I++L S++ K K+P +L C K H+H
Sbjct: 429 SVIRELISQSQNKSTKLPDVLLVCSFK--HYH 458
>At3g50890.1 68416.m05572 zinc finger homeobox family protein /
ZF-HD homeobox family protein hypothetical protein
T8K22.16 - Arabidopsis thaliana, chromosome II BAC
T8K22, PIR2:T00609
Length = 249
Score = 28.3 bits (60), Expect = 4.6
Identities = 9/22 (40%), Positives = 13/22 (59%)
Frame = +1
Query: 532 QQGKVGRLLAVGCRCHLTLHRK 597
++G +G L C CH + HRK
Sbjct: 87 EEGTLGALKCAACNCHRSFHRK 108
>At2g18350.1 68415.m02138 zinc finger homeobox family protein /
ZF-HD homeobox family protein
Length = 262
Score = 28.3 bits (60), Expect = 4.6
Identities = 11/24 (45%), Positives = 14/24 (58%)
Frame = +1
Query: 532 QQGKVGRLLAVGCRCHLTLHRKLI 603
++G V LL C CH + HRK I
Sbjct: 109 EEGTVESLLCAACDCHRSFHRKEI 132
>At5g18530.1 68418.m02191 beige/BEACH domain-containing protein
contains 5 WD-40 repeats (PF00400); contains
Beige/BEACH domain (Pfam PF02138); FACTOR ASSOCIATED
WITH N-SMASE ACTIVATION (FAN) (SP:Q92636) Homo
sapiens;similar to Lipopolysaccharide-responsive and
beige-like anchor protein (CDC4-like protein)
(Beige-like protein) (SP:P50851) [Homo sapiens}
Length = 909
Score = 27.9 bits (59), Expect = 6.1
Identities = 20/75 (26%), Positives = 34/75 (45%), Gaps = 3/75 (4%)
Frame = -1
Query: 616 DNLKELTCDEVS---SGNGSQQPTIAQLFLVGRRSDCSLDEKLRVVADFPRSEPSDGPVQ 446
D+ + +TC V+ SG+ S T+A L + + CS E ++ + F P D Q
Sbjct: 119 DDTENITCGSVTCEHSGSFSCWRTVAALLPIAQIRKCSASELQKLASSFHYECPED---Q 175
Query: 445 ALLVVEAAVHGRKLG 401
L + + G+ G
Sbjct: 176 ILASLHRLIDGKSSG 190
>At2g46380.1 68415.m05773 hypothetical protein weak similarity to
extra-large G-protein [Arabidopsis thaliana] GI:3201682
Length = 732
Score = 27.9 bits (59), Expect = 6.1
Identities = 15/40 (37%), Positives = 21/40 (52%)
Frame = +2
Query: 398 DPEFPAVDRSLYYKESLDRPITWLRPGEISDNPQLFVKAT 517
+P F +RS + SL P T++ PG S PQL + T
Sbjct: 291 NPGFYPHERSFGFGTSLHSPRTFIPPGSQSPGPQLRGRCT 330
>At5g08060.1 68418.m00940 expressed protein sigma factor F inhibitor
spoIIAB, Bacillus megaterium, PIR:B48402
Length = 131
Score = 27.5 bits (58), Expect = 8.0
Identities = 17/48 (35%), Positives = 26/48 (54%), Gaps = 1/48 (2%)
Frame = +3
Query: 474 LGKSATTLNFSSRLQSLRRPTRKSWAIVG-CWLPLPLDTSSQVNSFKL 614
+ KS +T SS +Q+LRR +K W I G C P L+ + ++L
Sbjct: 1 MAKSVSTAA-SSLVQNLRRYIKKPWQITGPCAHPEYLEAVPKATEYRL 47
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,594,569
Number of Sequences: 28952
Number of extensions: 326752
Number of successful extensions: 811
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 785
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 806
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1324661040
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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