Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0347
         (666 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ535204-1|CAD59404.1| 1187|Anopheles gambiae SMC2 protein protein.    30   0.057
AY753539-1|AAV28542.1| 3318|Anopheles gambiae SGS2 protein.            25   2.8  
AJ535203-1|CAD59403.1| 1229|Anopheles gambiae SMC1 protein protein.    24   3.7  

>AJ535204-1|CAD59404.1| 1187|Anopheles gambiae SMC2 protein protein.
          Length = 1187

 Score = 30.3 bits (65), Expect = 0.057
 Identities = 25/112 (22%), Positives = 52/112 (46%), Gaps = 10/112 (8%)
 Frame = -2

Query: 545  ERNKSSFKRTR*TISKLQKAIIEMERLIESLEKE------REISTNNNT-ELTKKIEKLE 387
            ++++  F+  +  I +LQK I+  +     LE++      R +  +  T E+T  +  L+
Sbjct: 811  KKHEQDFETLKLEIEELQKGIVTAKEQAVKLEEQIAALQQRLVEVSGTTDEMTAAVTALK 870

Query: 386  NQIKTAEKSSTKTNEFTDTLTAERDSAIKMLEEKDIIIISLKDEL---RNSN 240
             QIK  ++     ++       +RD  +K  +E  + I   ++E+   RN N
Sbjct: 871  QQIKQHKEKMNSQSKELKAKYHQRDKLLKQNDELKLEIKKKENEITKVRNEN 922



 Score = 26.2 bits (55), Expect = 0.93
 Identities = 17/55 (30%), Positives = 28/55 (50%), Gaps = 2/55 (3%)
 Frame = -2

Query: 440 EISTNNNTELTK--KIEKLENQIKTAEKSSTKTNEFTDTLTAERDSAIKMLEEKD 282
           +++ NN   L    +I K+ N       S  +    T    A+RDSA+K++E+KD
Sbjct: 135 QLNVNNPNFLIMQGRITKVLNMKPAEILSMIEEAAGTSMYEAKRDSALKLIEKKD 189


>AY753539-1|AAV28542.1| 3318|Anopheles gambiae SGS2 protein.
          Length = 3318

 Score = 24.6 bits (51), Expect = 2.8
 Identities = 15/43 (34%), Positives = 22/43 (51%), Gaps = 2/43 (4%)
 Frame = -3

Query: 592  KLQSYKTENTELLNEMKEINQVLKERGELYQN--CKKPLLKWK 470
            KL S   + T+ L++ KEI + LKE          K+ + KWK
Sbjct: 2881 KLNSVTQQVTQRLDKFKEIGKALKENNLKLAGTLIKEEVGKWK 2923


>AJ535203-1|CAD59403.1| 1229|Anopheles gambiae SMC1 protein protein.
          Length = 1229

 Score = 24.2 bits (50), Expect = 3.7
 Identities = 19/97 (19%), Positives = 47/97 (48%), Gaps = 6/97 (6%)
 Frame = -2

Query: 509 TISKLQKAIIEMERLIESLEKEREISTN------NNTELTKKIEKLENQIKTAEKSSTKT 348
           ++++ QK+  + +RL   + K+ +I  N         E  K+ EKL + IKT+     + 
Sbjct: 405 SVNREQKS--DQDRLDSEINKKAQIEENYKKIESEKNEALKRQEKLIDHIKTSRLGLEEQ 462

Query: 347 NEFTDTLTAERDSAIKMLEEKDIIIISLKDELRNSNI 237
                 L+ +  ++ + + E    + +++++L ++ I
Sbjct: 463 KRIKAELSQDVGTSKERIHELQSELDNVREQLGDAKI 499


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 378,051
Number of Sequences: 2352
Number of extensions: 5076
Number of successful extensions: 20
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 18
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 20
length of database: 563,979
effective HSP length: 62
effective length of database: 418,155
effective search space used: 66486645
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)