BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= ce--0347 (666 letters) Database: bee 438 sequences; 146,343 total letters Searching......................................................done Score E Sequences producing significant alignments: (bits) Value AY569719-1|AAS86672.1| 401|Apis mellifera feminizer protein. 35 8e-04 AY569718-1|AAS86671.1| 401|Apis mellifera feminizer protein. 35 8e-04 AY569715-1|AAS86668.1| 401|Apis mellifera feminizer protein. 35 8e-04 AY569714-1|AAS86667.1| 401|Apis mellifera feminizer protein. 35 8e-04 AY569713-1|AAS86666.1| 401|Apis mellifera feminizer protein. 35 8e-04 AY569711-1|AAS86664.1| 401|Apis mellifera feminizer protein. 35 8e-04 AY569702-1|AAS86655.1| 400|Apis mellifera feminizer protein. 35 8e-04 AY350616-1|AAQ57658.1| 401|Apis mellifera complementary sex det... 35 8e-04 AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ... 25 0.65 DQ342041-1|ABC69933.1| 828|Apis mellifera STIP protein. 24 1.1 X52884-1|CAA37066.1| 461|Apis mellifera elongation factor 1 alp... 23 2.0 AF015267-1|AAC38959.1| 461|Apis mellifera elongation factor-1al... 23 2.0 EF117814-1|ABO38437.1| 570|Apis mellifera cryptochrome 2 protein. 23 3.5 EF625899-1|ABR45906.1| 1010|Apis mellifera high Glx storage prot... 22 6.0 AY855337-1|AAW47987.1| 510|Apis mellifera tyrosine hydroxylase ... 22 6.0 >AY569719-1|AAS86672.1| 401|Apis mellifera feminizer protein. Length = 401 Score = 34.7 bits (76), Expect = 8e-04 Identities = 20/49 (40%), Positives = 26/49 (53%) Frame = -2 Query: 491 KAIIEMERLIESLEKEREISTNNNTELTKKIEKLENQIKTAEKSSTKTN 345 K I E E + L K EI T + T L IEK EN+ KT +K + +N Sbjct: 168 KPIFEREEIKNILNKTNEI-TEHRTVLAVNIEKSENETKTCKKYAISSN 215 >AY569718-1|AAS86671.1| 401|Apis mellifera feminizer protein. Length = 401 Score = 34.7 bits (76), Expect = 8e-04 Identities = 20/49 (40%), Positives = 26/49 (53%) Frame = -2 Query: 491 KAIIEMERLIESLEKEREISTNNNTELTKKIEKLENQIKTAEKSSTKTN 345 K I E E + L K EI T + T L IEK EN+ KT +K + +N Sbjct: 168 KPIFEREEIKNILNKTNEI-TEHRTVLAVNIEKSENETKTCKKYAISSN 215 >AY569715-1|AAS86668.1| 401|Apis mellifera feminizer protein. Length = 401 Score = 34.7 bits (76), Expect = 8e-04 Identities = 20/49 (40%), Positives = 26/49 (53%) Frame = -2 Query: 491 KAIIEMERLIESLEKEREISTNNNTELTKKIEKLENQIKTAEKSSTKTN 345 K I E E + L K EI T + T L IEK EN+ KT +K + +N Sbjct: 168 KPIFEREEIKNILNKTNEI-TEHRTVLAVNIEKSENETKTCKKYAISSN 215 >AY569714-1|AAS86667.1| 401|Apis mellifera feminizer protein. Length = 401 Score = 34.7 bits (76), Expect = 8e-04 Identities = 20/49 (40%), Positives = 26/49 (53%) Frame = -2 Query: 491 KAIIEMERLIESLEKEREISTNNNTELTKKIEKLENQIKTAEKSSTKTN 345 K I E E + L K EI T + T L IEK EN+ KT +K + +N Sbjct: 168 KPIFEREEIKNILNKTNEI-TEHRTVLAVNIEKSENETKTCKKYAISSN 215 >AY569713-1|AAS86666.1| 401|Apis mellifera feminizer protein. Length = 401 Score = 34.7 bits (76), Expect = 8e-04 Identities = 20/49 (40%), Positives = 26/49 (53%) Frame = -2 Query: 491 KAIIEMERLIESLEKEREISTNNNTELTKKIEKLENQIKTAEKSSTKTN 345 K I E E + L K EI T + T L IEK EN+ KT +K + +N Sbjct: 168 KPIFEREEIKNILNKTNEI-TEHRTVLAVNIEKSENETKTCKKYAISSN 215 >AY569711-1|AAS86664.1| 401|Apis mellifera feminizer protein. Length = 401 Score = 34.7 bits (76), Expect = 8e-04 Identities = 20/49 (40%), Positives = 26/49 (53%) Frame = -2 Query: 491 KAIIEMERLIESLEKEREISTNNNTELTKKIEKLENQIKTAEKSSTKTN 345 K I E E + L K EI T + T L IEK EN+ KT +K + +N Sbjct: 168 KPIFEREEIKNILNKTNEI-TEHRTVLAVNIEKSENETKTCKKYAISSN 215 >AY569702-1|AAS86655.1| 400|Apis mellifera feminizer protein. Length = 400 Score = 34.7 bits (76), Expect = 8e-04 Identities = 20/49 (40%), Positives = 26/49 (53%) Frame = -2 Query: 491 KAIIEMERLIESLEKEREISTNNNTELTKKIEKLENQIKTAEKSSTKTN 345 K I E E + L K EI T + T L IEK EN+ KT +K + +N Sbjct: 168 KPIFEREEIKNILNKTNEI-TEHRTVLAVNIEKSENETKTCKKYAISSN 215 >AY350616-1|AAQ57658.1| 401|Apis mellifera complementary sex determiner protein. Length = 401 Score = 34.7 bits (76), Expect = 8e-04 Identities = 20/49 (40%), Positives = 26/49 (53%) Frame = -2 Query: 491 KAIIEMERLIESLEKEREISTNNNTELTKKIEKLENQIKTAEKSSTKTN 345 K I E E + L K EI T + T L IEK EN+ KT +K + +N Sbjct: 168 KPIFEREEIKNILNKTNEI-TEHRTVLAVNIEKSENETKTCKKYAISSN 215 >AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein protein. Length = 1124 Score = 25.0 bits (52), Expect = 0.65 Identities = 22/68 (32%), Positives = 36/68 (52%) Frame = -2 Query: 548 NERNKSSFKRTR*TISKLQKAIIEMERLIESLEKEREISTNNNTELTKKIEKLENQIKTA 369 N + SFK T S L + +ME+L+ K RE ++ + + K++ +++IKT Sbjct: 627 NTTSMESFKPPTLTESLLNRHNEDMEKLMML--KHREF--RSSIKASDKLK--DSRIKTT 680 Query: 368 EKSSTKTN 345 EK ST N Sbjct: 681 EKLSTDPN 688 >DQ342041-1|ABC69933.1| 828|Apis mellifera STIP protein. Length = 828 Score = 24.2 bits (50), Expect = 1.1 Identities = 16/60 (26%), Positives = 33/60 (55%) Frame = -2 Query: 464 IESLEKEREISTNNNTELTKKIEKLENQIKTAEKSSTKTNEFTDTLTAERDSAIKMLEEK 285 + +LE E++ + + ++ I+ LEN + ++ +TN+ T TA+ A K L++K Sbjct: 348 VVALEAEKKNLSKVIDQHSQLIDTLENVLAIVDRLMDETNQLTLQETAD---AFKDLQDK 404 >X52884-1|CAA37066.1| 461|Apis mellifera elongation factor 1 alpha protein. Length = 461 Score = 23.4 bits (48), Expect = 2.0 Identities = 13/35 (37%), Positives = 17/35 (48%) Frame = -2 Query: 407 KKIEKLENQIKTAEKSSTKTNEFTDTLTAERDSAI 303 + IEK E + + K S K D L AER+ I Sbjct: 37 RTIEKFEKEAQEMGKGSFKYAWVLDKLKAERERGI 71 >AF015267-1|AAC38959.1| 461|Apis mellifera elongation factor-1alpha F2 protein. Length = 461 Score = 23.4 bits (48), Expect = 2.0 Identities = 13/35 (37%), Positives = 17/35 (48%) Frame = -2 Query: 407 KKIEKLENQIKTAEKSSTKTNEFTDTLTAERDSAI 303 + IEK E + + K S K D L AER+ I Sbjct: 37 RTIEKFEKEAQEMGKGSFKYAWVLDKLKAERERGI 71 >EF117814-1|ABO38437.1| 570|Apis mellifera cryptochrome 2 protein. Length = 570 Score = 22.6 bits (46), Expect = 3.5 Identities = 16/59 (27%), Positives = 27/59 (45%) Frame = -3 Query: 658 KDSRIKIKEYDSLFAEYEEAKSKLQSYKTENTELLNEMKEINQVLKERGELYQNCKKPL 482 K SRI I+ ++ + + + S K E LLN + + +KE E + K+ L Sbjct: 492 KSSRINIERMKQVYQQLNKYRGNGVSLKGETVGLLNALPPSS--MKETEEEKKKTKQSL 548 >EF625899-1|ABR45906.1| 1010|Apis mellifera high Glx storage protein protein. Length = 1010 Score = 21.8 bits (44), Expect = 6.0 Identities = 9/30 (30%), Positives = 16/30 (53%) Frame = -3 Query: 586 QSYKTENTELLNEMKEINQVLKERGELYQN 497 Q Y+ + E ++KE Q+ + G + QN Sbjct: 667 QQYQVVSVEQYQQLKEQGQISQVGGGIQQN 696 >AY855337-1|AAW47987.1| 510|Apis mellifera tyrosine hydroxylase protein. Length = 510 Score = 21.8 bits (44), Expect = 6.0 Identities = 9/33 (27%), Positives = 18/33 (54%) Frame = -3 Query: 616 AEYEEAKSKLQSYKTENTELLNEMKEINQVLKE 518 AEY K+Q K + +++E+++ LK+ Sbjct: 257 AEYRRNFKKMQEEKIFEPHRIPQLQEVSEFLKK 289 Database: bee Posted date: Oct 23, 2007 1:17 PM Number of letters in database: 146,343 Number of sequences in database: 438 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 105,921 Number of Sequences: 438 Number of extensions: 1888 Number of successful extensions: 16 Number of sequences better than 10.0: 15 Number of HSP's better than 10.0 without gapping: 16 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 16 length of database: 146,343 effective HSP length: 56 effective length of database: 121,815 effective search space used: 20099475 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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