Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0346
         (608 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    30   0.23 
SPCC1672.11c |||P-type ATPase |Schizosaccharomyces pombe|chr 3||...    29   0.40 
SPCC645.06c |rgf3|lad1|RhoGEF Rgf3|Schizosaccharomyces pombe|chr...    27   2.8  
SPCC1223.01 ||SPCC285.18|ubiquitin-protein ligase E3 |Schizosacc...    27   2.8  
SPAC15A10.11 |ubr11||N-end-recognizing protein |Schizosaccharomy...    26   5.0  
SPBC8D2.20c |sec31||COPII-coated vesicle component Sec31 |Schizo...    25   6.5  
SPAC21E11.08 |lcb2|SPAC2C4.02|serine palmitoyltransferase |Schiz...    25   8.7  

>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 30.3 bits (65), Expect = 0.23
 Identities = 21/67 (31%), Positives = 34/67 (50%)
 Frame = -2

Query: 205 GRVHSPPDVK*LLEPIVILNLNEPPTLNVDSQEVLSPVITQIIILRVSFLLHDVIPSDPP 26
           G V SPP+      PI  +++N  P +N  S+  L P  +++    ++   +   P  PP
Sbjct: 262 GTVSSPPNSP--PRPIAPVSMN--PAINSTSKPPLPPPSSRVSAAALA--ANKKRPPPPP 315

Query: 25  PPNRRQR 5
           PP+RR R
Sbjct: 316 PPSRRNR 322


>SPCC1672.11c |||P-type ATPase |Schizosaccharomyces pombe|chr
            3|||Manual
          Length = 1315

 Score = 29.5 bits (63), Expect = 0.40
 Identities = 14/42 (33%), Positives = 27/42 (64%), Gaps = 4/42 (9%)
 Frame = -2

Query: 133  PTLNVDSQEVLSPVITQIIIL-RVSFLLHDVIPSDP---PPP 20
            PT N+ S+ +LSP+I QI+++  + ++   ++  +P   PPP
Sbjct: 1129 PTANLVSKRILSPLIGQIVLICIIQYITLRIVRREPWYIPPP 1170


>SPCC645.06c |rgf3|lad1|RhoGEF Rgf3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1275

 Score = 26.6 bits (56), Expect = 2.8
 Identities = 19/63 (30%), Positives = 31/63 (49%), Gaps = 5/63 (7%)
 Frame = +1

Query: 274 PIRPIVSRITIHWPSFYNVVTGKTLALPNLIALQ-----HIPLSPAGVIAKRPAPIALPN 438
           P  P+ S ++ H   +    +    +L N I+L      ++PLSP    A+ P+PI L +
Sbjct: 172 PRPPLPSSVSSHSSPYSTTSSTSLYSLYNDISLSCSPEPYLPLSPTRSPARTPSPIRLYS 231

Query: 439 SCA 447
           S A
Sbjct: 232 SDA 234


>SPCC1223.01 ||SPCC285.18|ubiquitin-protein ligase E3
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 732

 Score = 26.6 bits (56), Expect = 2.8
 Identities = 12/25 (48%), Positives = 15/25 (60%)
 Frame = +3

Query: 381 PPFASWRNSEEARTDRPSQQLRSLN 455
           PP AS RN  E  +  PS+Q  S+N
Sbjct: 353 PPGASGRNRRERTSSTPSEQSTSVN 377


>SPAC15A10.11 |ubr11||N-end-recognizing protein |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 2052

 Score = 25.8 bits (54), Expect = 5.0
 Identities = 12/24 (50%), Positives = 14/24 (58%)
 Frame = +3

Query: 510 VKSAHFLTNRPKSAKSLINQKNRP 581
           VK   FLTN   +  SL+ Q NRP
Sbjct: 675 VKDYDFLTNLNATTLSLLTQSNRP 698


>SPBC8D2.20c |sec31||COPII-coated vesicle component Sec31
            |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1224

 Score = 25.4 bits (53), Expect = 6.5
 Identities = 10/18 (55%), Positives = 13/18 (72%)
 Frame = -2

Query: 139  EPPTLNVDSQEVLSPVIT 86
            EPPT++V S   LSP +T
Sbjct: 1034 EPPTVSVPSPSALSPSVT 1051


>SPAC21E11.08 |lcb2|SPAC2C4.02|serine palmitoyltransferase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 603

 Score = 25.0 bits (52), Expect = 8.7
 Identities = 11/25 (44%), Positives = 14/25 (56%)
 Frame = +3

Query: 105 TSCESTFKVGGSFKLRMTMGSSNYL 179
           T   STFK+ G   L + + S NYL
Sbjct: 174 TDSNSTFKLTGDTSLALNVSSYNYL 198


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,510,803
Number of Sequences: 5004
Number of extensions: 48876
Number of successful extensions: 95
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 95
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 95
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 268287866
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)