Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0346
         (608 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_06_0294 + 22022630-22024006,22024109-22024234,22024319-220244...    30   1.2  
11_06_0278 - 21854859-21855101,21855529-21855587,21855684-218557...    30   1.2  
09_02_0036 + 3217163-3217584,3217752-3218322                           30   1.2  
06_01_0092 - 775290-775691                                             28   6.7  
05_06_0148 + 25989595-25990956                                         28   6.7  
11_02_0098 + 8292536-8292787,8292909-8292920                           27   8.8  
04_01_0312 + 4206400-4206627,4206661-4207269,4207425-4207902,420...    27   8.8  

>11_06_0294 +
           22022630-22024006,22024109-22024234,22024319-22024423,
           22024525-22024659,22024798-22024847,22026487-22026545,
           22026819-22026928,22027941-22028174,22028278-22028377,
           22028699-22028829,22029834-22029914,22029970-22030128
          Length = 888

 Score = 30.3 bits (65), Expect = 1.2
 Identities = 16/48 (33%), Positives = 23/48 (47%)
 Frame = +3

Query: 360 LNRLAAHPPFASWRNSEEARTDRPSQQLRSLNGEWQIVSVNILLKFAL 503
           L+R +   PF SW N  +A  D+ +  L  LNG    +   + LK  L
Sbjct: 399 LSRPSRQDPFTSWDNMRQACLDKGTHALGKLNGRAAALIEKVNLKRGL 446


>11_06_0278 -
           21854859-21855101,21855529-21855587,21855684-21855711,
           21855812-21856702,21856792-21857011,21857638-21857687,
           21863174-21863284,21863379-21863483,21863568-21863693,
           21863796-21865187
          Length = 1074

 Score = 30.3 bits (65), Expect = 1.2
 Identities = 16/48 (33%), Positives = 23/48 (47%)
 Frame = +3

Query: 360 LNRLAAHPPFASWRNSEEARTDRPSQQLRSLNGEWQIVSVNILLKFAL 503
           L+R +   PF SW N  +A  D+ +  L  LNG    +   + LK  L
Sbjct: 404 LSRPSRQDPFTSWDNMRQACLDKGTHALGKLNGRAAALIEKVNLKRGL 451


>09_02_0036 + 3217163-3217584,3217752-3218322
          Length = 330

 Score = 30.3 bits (65), Expect = 1.2
 Identities = 13/28 (46%), Positives = 19/28 (67%), Gaps = 1/28 (3%)
 Frame = +1

Query: 298 ITIHWPSFYNVV-TGKTLALPNLIALQH 378
           I+  W  F N+V +G TL++PN + LQH
Sbjct: 69  ISAGWSRFINLVQSGPTLSIPNYVLLQH 96


>06_01_0092 - 775290-775691
          Length = 133

 Score = 27.9 bits (59), Expect = 6.7
 Identities = 12/18 (66%), Positives = 15/18 (83%)
 Frame = -2

Query: 418 RASSLLRQLAKGGCAARR 365
           RA+SLLRQL + GCAA +
Sbjct: 22  RAASLLRQLIEDGCAAAK 39


>05_06_0148 + 25989595-25990956
          Length = 453

 Score = 27.9 bits (59), Expect = 6.7
 Identities = 13/47 (27%), Positives = 21/47 (44%)
 Frame = -2

Query: 157 VILNLNEPPTLNVDSQEVLSPVITQIIILRVSFLLHDVIPSDPPPPN 17
           VI+ +  PP    D     +P + +I     S   H++ P D P P+
Sbjct: 15  VIIAVPTPPASTADVAASSAPAVARIAAANPSISFHNLPPPDYPEPD 61


>11_02_0098 + 8292536-8292787,8292909-8292920
          Length = 87

 Score = 27.5 bits (58), Expect = 8.8
 Identities = 17/40 (42%), Positives = 24/40 (60%)
 Frame = -2

Query: 127 LNVDSQEVLSPVITQIIILRVSFLLHDVIPSDPPPPNRRQ 8
           + +D Q V   + ++ +ILR+S L   V PS PPPP  RQ
Sbjct: 48  IGLDKQRV--KLYSERMILRLSDLCAPV-PSRPPPPPHRQ 84


>04_01_0312 +
           4206400-4206627,4206661-4207269,4207425-4207902,
           4208006-4208297,4209278-4209569,4210013-4210465
          Length = 783

 Score = 27.5 bits (58), Expect = 8.8
 Identities = 12/24 (50%), Positives = 16/24 (66%), Gaps = 1/24 (4%)
 Frame = +1

Query: 310 WPSFYNVV-TGKTLALPNLIALQH 378
           W  F N+V +G TL+LP  + LQH
Sbjct: 133 WSRFTNLVQSGPTLSLPEYVLLQH 156


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,316,669
Number of Sequences: 37544
Number of extensions: 401754
Number of successful extensions: 1201
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1140
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1196
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1454766756
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)