Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0346
         (608 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate r...    24   1.0  
AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.    23   2.3  
DQ855483-1|ABH88170.1|  117|Apis mellifera chemosensory protein ...    21   7.1  
AJ973398-1|CAJ01445.1|  117|Apis mellifera hypothetical protein ...    21   7.1  
AF388659-2|AAK71994.1|  463|Apis mellifera 1D-myo-inositol-trisp...    21   9.4  
AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.              21   9.4  

>AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate
           receptor 1 protein.
          Length = 953

 Score = 24.2 bits (50), Expect = 1.0
 Identities = 12/37 (32%), Positives = 19/37 (51%)
 Frame = +3

Query: 96  GDRTSCESTFKVGGSFKLRMTMGSSNYLTSGGL*TRP 206
           GD+ S    F   G+ K+ +++  SN    G L T+P
Sbjct: 369 GDQVSVGRYFYPNGTEKMTLSVNESNITWPGRLQTKP 405


>AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.
          Length = 996

 Score = 23.0 bits (47), Expect = 2.3
 Identities = 11/30 (36%), Positives = 16/30 (53%)
 Frame = -3

Query: 336 SHDVVKRRPVNCNTTHYRANWVPGPPSTAA 247
           S +  K++P +C+T  YR   V  P  T A
Sbjct: 560 SDECNKKQPSDCDTLEYRNGEVTTPLFTPA 589


>DQ855483-1|ABH88170.1|  117|Apis mellifera chemosensory protein 2
           protein.
          Length = 117

 Score = 21.4 bits (43), Expect = 7.1
 Identities = 10/26 (38%), Positives = 12/26 (46%)
 Frame = +1

Query: 367 ALQHIPLSPAGVIAKRPAPIALPNSC 444
           AL   P  P G   K  AP+ L  +C
Sbjct: 55  ALGEAPCDPVGRRLKSLAPLVLRGAC 80


>AJ973398-1|CAJ01445.1|  117|Apis mellifera hypothetical protein
           protein.
          Length = 117

 Score = 21.4 bits (43), Expect = 7.1
 Identities = 10/26 (38%), Positives = 12/26 (46%)
 Frame = +1

Query: 367 ALQHIPLSPAGVIAKRPAPIALPNSC 444
           AL   P  P G   K  AP+ L  +C
Sbjct: 55  ALGEAPCDPVGRRLKSLAPLVLRGAC 80


>AF388659-2|AAK71994.1|  463|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform B protein.
          Length = 463

 Score = 21.0 bits (42), Expect = 9.4
 Identities = 9/21 (42%), Positives = 14/21 (66%)
 Frame = -2

Query: 145 LNEPPTLNVDSQEVLSPVITQ 83
           L+ PPTLN+  Q +L+ +  Q
Sbjct: 31  LSTPPTLNLMEQILLAKIEKQ 51


>AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.
          Length = 898

 Score = 21.0 bits (42), Expect = 9.4
 Identities = 7/20 (35%), Positives = 13/20 (65%)
 Frame = -2

Query: 82  IIILRVSFLLHDVIPSDPPP 23
           ++I  +  ++ DVIP+D  P
Sbjct: 573 LVISEIQMVIVDVIPTDKNP 592


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 179,030
Number of Sequences: 438
Number of extensions: 4046
Number of successful extensions: 7
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 17971191
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)