Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0346
         (608 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g49820.1 68418.m06170 expressed protein contains Pfam domain,...    28   5.6  
At2g18760.1 68415.m02184 SNF2 domain-containing protein / helica...    28   5.6  
At1g28340.1 68414.m03481 leucine-rich repeat family protein cont...    28   5.6  
At5g64550.1 68418.m08112 loricrin-related contains weak similari...    27   7.4  
At1g27020.1 68414.m03294 expressed protein                             27   7.4  
At4g37790.1 68417.m05348 homeobox-leucine zipper protein 22 (HAT...    27   9.7  

>At5g49820.1 68418.m06170 expressed protein contains Pfam domain,
           PF04884: Protein of unknown function, DUF647
          Length = 497

 Score = 27.9 bits (59), Expect = 5.6
 Identities = 18/50 (36%), Positives = 25/50 (50%), Gaps = 1/50 (2%)
 Frame = -2

Query: 163 PIVILNLNEPP-TLNVDSQEVLSPVITQIIILRVSFLLHDVIPSDPPPPN 17
           P V L  + PP T+  DS  +LS    +I     S  + D+ P  PPPP+
Sbjct: 2   PSVKLTHHSPPDTIASDSVRLLSRETLRISASLASPPVDDLPPHSPPPPD 51


>At2g18760.1 68415.m02184 SNF2 domain-containing protein / helicase
           domain-containing protein similar to SP|Q03468 Excision
           repair protein ERCC-6 (Cockayne syndrome protein CSB)
           {Homo sapiens}; contains PFam profiles PF00271: Helicase
           conserved C-terminal domain, PF00176: SNF2 family
           N-terminal domain
          Length = 1187

 Score = 27.9 bits (59), Expect = 5.6
 Identities = 16/55 (29%), Positives = 24/55 (43%)
 Frame = +1

Query: 283 PIVSRITIHWPSFYNVVTGKTLALPNLIALQHIPLSPAGVIAKRPAPIALPNSCA 447
           PI +++T  W  F  V  GK   LP   A   +P++  G     P  ++    CA
Sbjct: 576 PIQNKLTELWSLFDFVFPGKLGVLPVFEAEFSVPITVGGYANASPLQVSTAYRCA 630


>At1g28340.1 68414.m03481 leucine-rich repeat family protein
           contains leucine rich-repeat (LRR) domains Pfam:PF00560,
           INTERPRO:IPR001611; contains some similarity to
           receptor-like protein kinases
          Length = 626

 Score = 27.9 bits (59), Expect = 5.6
 Identities = 15/48 (31%), Positives = 23/48 (47%)
 Frame = -1

Query: 146 LK*ATHLECGLTRGPITSNYANYNFTGIIFITRCYSFGSAAAESAATD 3
           L+ AT L CG  +     +Y   ++ G  F  R  SFG +A    +T+
Sbjct: 193 LRTATRLTCGTGKSRFDEDYRGDHWGGDRFWNRMRSFGKSADSPRSTE 240


>At5g64550.1 68418.m08112 loricrin-related contains weak similarity
           to Loricrin (Swiss-Prot:P23490) [Homo sapiens]
          Length = 634

 Score = 27.5 bits (58), Expect = 7.4
 Identities = 17/61 (27%), Positives = 28/61 (45%)
 Frame = +3

Query: 9   CRRFGGGGSEGITSCNKNDTRKIIICVITGDRTSCESTFKVGGSFKLRMTMGSSNYLTSG 188
           C + GGG    I SC ++   +  +C+  G    C+S+    G+       GS+NY  + 
Sbjct: 308 CIKHGGGKRCRIESCTRSAEGQAGLCISHGGGRRCQSSGCTKGA------QGSTNYCKAH 361

Query: 189 G 191
           G
Sbjct: 362 G 362


>At1g27020.1 68414.m03294 expressed protein
          Length = 308

 Score = 27.5 bits (58), Expect = 7.4
 Identities = 10/21 (47%), Positives = 12/21 (57%)
 Frame = +3

Query: 336 WENPGVTQLNRLAAHPPFASW 398
           WE P  T  N+LA    FA+W
Sbjct: 163 WEKPTSTDFNQLAKESEFAAW 183


>At4g37790.1 68417.m05348 homeobox-leucine zipper protein 22 (HAT22)
           / HD-ZIP protein 22 identical to homeobox-leucine zipper
           protein HAT22 (HD-ZIP protein 22) (SP:P46604)
           [Arabidopsis thaliana]
          Length = 278

 Score = 27.1 bits (57), Expect = 9.7
 Identities = 12/32 (37%), Positives = 16/32 (50%)
 Frame = +3

Query: 9   CRRFGGGGSEGITSCNKNDTRKIIICVITGDR 104
           C R GGGG  G T+    +T K    ++T  R
Sbjct: 235 CERLGGGGVGGDTTAVDEETAKGAFSIVTKPR 266


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,675,062
Number of Sequences: 28952
Number of extensions: 284571
Number of successful extensions: 673
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 646
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 673
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1216725696
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)