Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ce--0344
(673 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC32H8.12c |act1|cps8|actin |Schizosaccharomyces pombe|chr 2||... 195 6e-51
SPAC11H11.06 |arp2|SPAC22F8.01|ARP2/3 actin-organizing complex s... 113 2e-26
SPBC1347.12 |||actin-like protein Arp1 |Schizosaccharomyces pomb... 104 1e-23
SPAC630.03 |arp3|act2|actin-like protein Arp3|Schizosaccharomyce... 103 2e-23
SPBC365.10 |||actin-like protein Arp5 |Schizosaccharomyces pombe... 66 3e-12
SPBP23A10.08 |alp5|arp4|actin-like protein Arp4|Schizosaccharomy... 66 4e-12
SPAC23D3.09 |arp42|arp4|SWI/SNF and RSC complex subunit Arp42|Sc... 55 1e-08
SPAC1071.06 |arp9||SWI/SNF and RSC complex subunit Arp9|Schizosa... 42 6e-05
SPAC26A3.05 |chc1||clathrin heavy chain Chc1 |Schizosaccharomyce... 32 0.086
SPCC1682.08c |||RNA-binding protein Mcp2|Schizosaccharomyces pom... 32 0.086
SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1... 30 0.35
SPAC20G8.05c |cdc15||cell division control protein Cdc15|Schizos... 28 1.1
SPAC13F5.04c |||endosomal sorting protein |Schizosaccharomyces p... 27 1.9
SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||M... 27 3.3
SPCC622.02 |||dubious|Schizosaccharomyces pombe|chr 3|||Manual 27 3.3
SPAC56F8.02 |||AMP binding enzyme |Schizosaccharomyces pombe|chr... 26 4.3
SPBC115.01c |rrp46||exosome subunit Rrp46 |Schizosaccharomyces p... 26 4.3
SPAC328.05 |||RNA-binding protein involved in export of mRNAs|Sc... 26 5.7
SPCC162.04c |wtf13||wtf element Wtf13|Schizosaccharomyces pombe|... 25 7.5
SPAC12G12.04 |hsp60|hsp60|mitochondrial heat shock protein Hsp60... 25 7.5
SPAC959.05c |||protein disulfide isomerase |Schizosaccharomyces ... 25 7.5
SPBC16G5.15c |fkh2||fork head transcription factor Fkh2 |Schizos... 25 9.9
SPCC1906.03 |wtf19||wtf element Wtf19|Schizosaccharomyces pombe|... 25 9.9
SPBC1773.15 |||membrane transporter|Schizosaccharomyces pombe|ch... 25 9.9
SPBC2G5.05 |||transketolase |Schizosaccharomyces pombe|chr 2|||M... 25 9.9
SPCC663.12 |cid12||poly|Schizosaccharomyces pombe|chr 3|||Manual 25 9.9
SPCC1620.02 |wtf23||wtf element Wtf23|Schizosaccharomyces pombe|... 25 9.9
>SPBC32H8.12c |act1|cps8|actin |Schizosaccharomyces pombe|chr
2|||Manual
Length = 375
Score = 195 bits (475), Expect = 6e-51
Identities = 98/138 (71%), Positives = 102/138 (73%)
Frame = +1
Query: 256 SKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKM 435
SKRGILTLKYPIEHGIV NWDDMEKIWHHTFYNELRVAPEEHP LLTEAPLNPK+NREKM
Sbjct: 60 SKRGILTLKYPIEHGIVNNWDDMEKIWHHTFYNELRVAPEEHPCLLTEAPLNPKSNREKM 119
Query: 436 TQIMFETFNTPAMYVAIQAVLSLYGSVVPPVFVLDSGDGVFHTRAHLRRIPHSPHAIXXX 615
TQI+FETFN PA YVAIQAVLSLY S VLDSGDGV HT + PHAI
Sbjct: 120 TQIIFETFNAPAFYVAIQAVLSLYASGRTTGIVLDSGDGVTHT-VPIYEGYALPHAIMRL 178
Query: 616 XXXXXXXXXXXMKILTQR 669
MKIL +R
Sbjct: 179 DLAGRDLTDYLMKILMER 196
Score = 122 bits (293), Expect = 6e-29
Identities = 53/60 (88%), Positives = 59/60 (98%)
Frame = +2
Query: 83 DEEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEARAK 262
+EE+AALV+DNGSGMCKAGFAGDDAPRAVFPSIVGRPRH G+MVGMGQKDSYVGDEA++K
Sbjct: 2 EEEIAALVIDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHHGIMVGMGQKDSYVGDEAQSK 61
>SPAC11H11.06 |arp2|SPAC22F8.01|ARP2/3 actin-organizing complex
subunit Arp2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 390
Score = 113 bits (272), Expect = 2e-26
Identities = 49/100 (49%), Positives = 72/100 (72%)
Frame = +1
Query: 262 RGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQ 441
R +L +KYP+E+GI+ ++++M ++W +TF+ +L++ P +LLTE P+NP ANREKM +
Sbjct: 62 RSLLQVKYPMENGIIRDFEEMNQLWDYTFFEKLKIDPRGRKILLTEPPMNPVANREKMCE 121
Query: 442 IMFETFNTPAMYVAIQAVLSLYGSVVPPVFVLDSGDGVFH 561
MFE + +YVAIQAVLSLY + V+DSGDGV H
Sbjct: 122 TMFERYGFGGVYVAIQAVLSLYAQGLSSGVVVDSGDGVTH 161
Score = 54.8 bits (126), Expect = 1e-08
Identities = 30/59 (50%), Positives = 37/59 (62%), Gaps = 2/59 (3%)
Frame = +2
Query: 89 EVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRP--RHQGVMVGMGQKDSYVGDEARA 259
E A +V+DNG+G K G+A D+ PR FPSIVGRP R + + KD VGDEA A
Sbjct: 2 ESAPIVLDNGTGFVKVGYAKDNFPRFQFPSIVGRPILRAEEKTGNVQIKDVMVGDEAEA 60
>SPBC1347.12 |||actin-like protein Arp1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 379
Score = 104 bits (250), Expect = 1e-23
Identities = 47/102 (46%), Positives = 68/102 (66%), Gaps = 1/102 (0%)
Frame = +1
Query: 262 RGILTLKYPIEHGIVTNWDDMEKIWHHTFYNE-LRVAPEEHPVLLTEAPLNPKANREKMT 438
RG+L ++ PIE GI+ NW DME+IW + + ++ L PEEHP+LLTE PL N+EK+
Sbjct: 66 RGLLKIQRPIERGIIQNWSDMEEIWSYIYSDQQLNTLPEEHPLLLTEPPLANIRNKEKIA 125
Query: 439 QIMFETFNTPAMYVAIQAVLSLYGSVVPPVFVLDSGDGVFHT 564
+ +ET N PA+ ++Q VL+LY S VL+ GDG+ H+
Sbjct: 126 EYFYETLNVPALSFSLQPVLALYASARTTGIVLECGDGLTHS 167
Score = 67.7 bits (158), Expect = 1e-12
Identities = 29/52 (55%), Positives = 38/52 (73%)
Frame = +2
Query: 101 LVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAR 256
+ +DNGSG KAGFAGDD P+ +FP+ VGR +H+ VM QKD +VG EA+
Sbjct: 12 ICIDNGSGFIKAGFAGDDIPKCLFPTCVGRIKHERVMPSSIQKDMFVGSEAQ 63
>SPAC630.03 |arp3|act2|actin-like protein Arp3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 427
Score = 103 bits (247), Expect = 2e-23
Identities = 50/104 (48%), Positives = 63/104 (60%), Gaps = 8/104 (7%)
Frame = +1
Query: 274 TLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFE 453
+L YPI HG + NWD ME+ W + + LR PE+H LLTE PLNP NRE +IMFE
Sbjct: 89 SLDYPIRHGQIENWDHMERFWQQSLFKYLRCEPEDHYFLLTEPPLNPPENRENTAEIMFE 148
Query: 454 TFNTPAMYVAIQAVLSLYGSVVPPVF--------VLDSGDGVFH 561
+FN +Y+A+QAVL+L S V+DSGDGV H
Sbjct: 149 SFNCAGLYIAVQAVLALAASWTSSKVTDRSLTGTVVDSGDGVTH 192
Score = 42.7 bits (96), Expect = 5e-05
Identities = 20/52 (38%), Positives = 32/52 (61%), Gaps = 2/52 (3%)
Frame = +2
Query: 101 LVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVG--MGQKDSYVGDE 250
+++DNG+G K G+AG+DAP VFP+++ R G G + K SY+ +
Sbjct: 8 IIMDNGTGYSKLGYAGNDAPSYVFPTVIA-TRSAGASSGPAVSSKPSYMASK 58
>SPBC365.10 |||actin-like protein Arp5 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 721
Score = 66.5 bits (155), Expect = 3e-12
Identities = 32/94 (34%), Positives = 52/94 (55%), Gaps = 2/94 (2%)
Frame = +1
Query: 286 PIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNT 465
P E +++NWD ME++ +TF +L + EHP+ +TE NP R MT+++FE +N
Sbjct: 86 PFERNVISNWDLMEQVLDYTFL-KLGIDRMEHPICMTEPLANPTYVRSTMTELLFELYNA 144
Query: 466 PAMYVAIQAVLSLYGSVVPPV--FVLDSGDGVFH 561
P++ I + S Y + P VL+ G+ H
Sbjct: 145 PSVAYGIDGLFSFYHNTKPSSSGIVLNLGNAASH 178
Score = 35.9 bits (79), Expect = 0.005
Identities = 15/32 (46%), Positives = 22/32 (68%)
Frame = +2
Query: 101 LVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPR 196
LV+DNGS +AG+ G+ P+ VF ++V R R
Sbjct: 27 LVIDNGSWQLRAGWGGEKDPKLVFDNLVSRYR 58
>SPBP23A10.08 |alp5|arp4|actin-like protein Arp4|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 433
Score = 66.1 bits (154), Expect = 4e-12
Identities = 32/92 (34%), Positives = 48/92 (52%)
Frame = +1
Query: 271 LTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMF 450
+ +K I +G V NWD +W + +L+ P EHP+L+TE NP NR K + MF
Sbjct: 63 MEIKNAIRNGWVENWDVTVDLWRYGLEQQLKTNPLEHPILITEPFDNPPENRVKTLETMF 122
Query: 451 ETFNTPAMYVAIQAVLSLYGSVVPPVFVLDSG 546
E+ PA Y+A Q + + S ++D G
Sbjct: 123 ESLRCPATYLAKQETCAAFASGKGTACLVDIG 154
Score = 40.3 bits (90), Expect = 2e-04
Identities = 16/34 (47%), Positives = 24/34 (70%)
Frame = +2
Query: 86 EEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVG 187
+EV+A+V+D GS + GF+G+D P+ V PS G
Sbjct: 9 DEVSAIVIDPGSKWTRIGFSGEDIPKCVLPSYCG 42
>SPAC23D3.09 |arp42|arp4|SWI/SNF and RSC complex subunit
Arp42|Schizosaccharomyces pombe|chr 1|||Manual
Length = 430
Score = 54.8 bits (126), Expect = 1e-08
Identities = 23/84 (27%), Positives = 45/84 (53%)
Frame = +1
Query: 295 HGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNTPAM 474
+GI+ +W+ W +L+V P E+ +++TE NP++ R+++ + FE + PA
Sbjct: 74 NGIIQDWESTLYTWERGLKEKLQVNPTEYAMMITEPSWNPQSVRQQIMEAAFEQLHVPAF 133
Query: 475 YVAIQAVLSLYGSVVPPVFVLDSG 546
Y+ QAV + + ++D G
Sbjct: 134 YLTKQAVCVAFANSKSTALIVDIG 157
Score = 37.1 bits (82), Expect = 0.002
Identities = 19/55 (34%), Positives = 32/55 (58%)
Frame = +2
Query: 86 EEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDE 250
EE+ +LV+D GS + G+AG+++P + PS + GV + ++ YV DE
Sbjct: 8 EEIPSLVIDPGSCWTRFGYAGEESPMTILPS------YYGVRSDVTGRNKYVVDE 56
>SPAC1071.06 |arp9||SWI/SNF and RSC complex subunit
Arp9|Schizosaccharomyces pombe|chr 1|||Manual
Length = 523
Score = 42.3 bits (95), Expect = 6e-05
Identities = 26/91 (28%), Positives = 41/91 (45%), Gaps = 4/91 (4%)
Frame = +1
Query: 286 PIEHGIVTNWDDMEKIWHHTFYNELRVAPEE----HPVLLTEAPLNPKANREKMTQIMFE 453
PI+ G V +W+ ++ W H Y+ L P + +PV L +RE TQ FE
Sbjct: 113 PIQRGRVVDWEALKAFWKH-LYSLLLKDPNDTTFRYPVCLVIPTYWSLYDRELATQFFFE 171
Query: 454 TFNTPAMYVAIQAVLSLYGSVVPPVFVLDSG 546
P +A + ++ LY + V+D G
Sbjct: 172 ECQVPGFTIAYEPLMGLYAIGILHGLVIDIG 202
>SPAC26A3.05 |chc1||clathrin heavy chain Chc1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1666
Score = 31.9 bits (69), Expect = 0.086
Identities = 19/53 (35%), Positives = 31/53 (58%), Gaps = 5/53 (9%)
Frame = +1
Query: 346 FYNELRVAPEEHPVLLTE--APLNPKANREKMTQIMFETFNTPAM---YVAIQ 489
+Y L E+HP+LLT+ A L P+ + ++ +I ++ NTP + VAIQ
Sbjct: 1399 YYRALNFYLEQHPMLLTDLLAALTPRIDHPRVIRIFEKSENTPLILNFMVAIQ 1451
>SPCC1682.08c |||RNA-binding protein Mcp2|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 703
Score = 31.9 bits (69), Expect = 0.086
Identities = 15/35 (42%), Positives = 24/35 (68%), Gaps = 2/35 (5%)
Frame = -3
Query: 536 STNTGGTTEPYSESTAWMATYMAGVLNVSNM--IW 438
STNT GT +PYS S++ ++Y GV + +++ IW
Sbjct: 290 STNTSGTLKPYSLSSSRSSSYSKGVNSAASLQSIW 324
>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 800
Score = 29.9 bits (64), Expect = 0.35
Identities = 19/55 (34%), Positives = 23/55 (41%), Gaps = 1/55 (1%)
Frame = -2
Query: 243 PT*ESFCPI-PTITP*WRGLPTIEGNTARGASSPAKPALHIPEPLSTTNAATSSS 82
PT S P+ PT+ P P N S P PL+TTN TS+S
Sbjct: 401 PTGNSTTPVTPTVPPTSSSTPLTTTNCTTSTSVPYTSTPVTSTPLATTNCTTSTS 455
>SPAC20G8.05c |cdc15||cell division control protein
Cdc15|Schizosaccharomyces pombe|chr 1|||Manual
Length = 927
Score = 28.3 bits (60), Expect = 1.1
Identities = 13/30 (43%), Positives = 16/30 (53%)
Frame = -3
Query: 254 VPHLLHKSPSVPYRPSRPDGGAFPRSRGTR 165
+ L+ K+PS PY SRP A S TR
Sbjct: 306 IDQLISKAPSYPYSSSRPSASASLASSPTR 335
>SPAC13F5.04c |||endosomal sorting protein |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 277
Score = 27.5 bits (58), Expect = 1.9
Identities = 17/66 (25%), Positives = 29/66 (43%)
Frame = -2
Query: 318 IPVSDDSVFDGVFEGQDTSFARASSPT*ESFCPIPTITP*WRGLPTIEGNTARGASSPAK 139
+P + +V +TSFA ++ S PT + P +E + +S+PA
Sbjct: 63 LPTQEAAVETNASASHETSFALPTTSPAASLSISPTKSAAVSSEPNVEADVKSLSSTPAA 122
Query: 138 PALHIP 121
P L+ P
Sbjct: 123 PQLNSP 128
>SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 309
Score = 26.6 bits (56), Expect = 3.3
Identities = 17/41 (41%), Positives = 21/41 (51%), Gaps = 2/41 (4%)
Frame = -2
Query: 246 SPT*ESFC--PIPTITP*WRGLPTIEGNTARGASSPAKPAL 130
S T +SF P+PT P LPT NT + P+ PAL
Sbjct: 64 SNTPKSFAAPPVPTGAP---SLPTSSNNTQQAEERPSMPAL 101
>SPCC622.02 |||dubious|Schizosaccharomyces pombe|chr 3|||Manual
Length = 127
Score = 26.6 bits (56), Expect = 3.3
Identities = 23/58 (39%), Positives = 27/58 (46%)
Frame = -1
Query: 277 GSGYLFCSCLISYIRVLLSHTDHHALMAGPSHDRGEHGARSIISCETGLAHTGAIVYY 104
G G F CLI++IR +SH D EHG II C T L G I+YY
Sbjct: 49 GLGIAFIYCLIAFIRE-MSHPSSR-------KDTMEHGL-PIILCST-LMLVGNILYY 96
>SPAC56F8.02 |||AMP binding enzyme |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1517
Score = 26.2 bits (55), Expect = 4.3
Identities = 13/35 (37%), Positives = 20/35 (57%)
Frame = +2
Query: 146 GDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDE 250
G+ PRA F ++ P H G+++ M KD G+E
Sbjct: 502 GNQNPRATFVPLLCLPEHGGMVISM--KDWIGGEE 534
>SPBC115.01c |rrp46||exosome subunit Rrp46 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 226
Score = 26.2 bits (55), Expect = 4.3
Identities = 10/25 (40%), Positives = 18/25 (72%)
Frame = +1
Query: 388 LLTEAPLNPKANREKMTQIMFETFN 462
+L APL+ + +KM +++FET+N
Sbjct: 181 VLETAPLHAEEVSKKMKELLFETYN 205
>SPAC328.05 |||RNA-binding protein involved in export of
mRNAs|Schizosaccharomyces pombe|chr 1|||Manual
Length = 434
Score = 25.8 bits (54), Expect = 5.7
Identities = 12/30 (40%), Positives = 14/30 (46%)
Frame = -3
Query: 299 PCSMGYLRVRIPLLLVPHLLHKSPSVPYRP 210
P + Y PL VP +L PSV Y P
Sbjct: 349 PLQLSYAHYATPLPAVPTVLSGLPSVAYTP 378
>SPCC162.04c |wtf13||wtf element Wtf13|Schizosaccharomyces pombe|chr
3|||Manual
Length = 418
Score = 25.4 bits (53), Expect = 7.5
Identities = 11/27 (40%), Positives = 15/27 (55%)
Frame = -3
Query: 557 KTPSPESSTNTGGTTEPYSESTAWMAT 477
K P PE ++ G T PYSE ++ T
Sbjct: 27 KGPLPEYNSEDGSTLPPYSEIWKYIKT 53
>SPAC12G12.04 |hsp60|hsp60|mitochondrial heat shock protein
Hsp60|Schizosaccharomyces pombe|chr 1|||Manual
Length = 582
Score = 25.4 bits (53), Expect = 7.5
Identities = 12/43 (27%), Positives = 22/43 (51%)
Frame = -2
Query: 375 LGGDTQLIVEGMMPNLLHVIPVSDDSVFDGVFEGQDTSFARAS 247
+GG +++ V ++ + +V +GV G TSF +AS
Sbjct: 413 VGGSSEVEVNEKKDRIVDALNAVKAAVSEGVLPGAGTSFVKAS 455
>SPAC959.05c |||protein disulfide isomerase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 632
Score = 25.4 bits (53), Expect = 7.5
Identities = 9/17 (52%), Positives = 12/17 (70%)
Frame = +1
Query: 511 SVVPPVFVLDSGDGVFH 561
S+ PPVFV+D GV +
Sbjct: 513 SITPPVFVIDHSKGVIY 529
>SPBC16G5.15c |fkh2||fork head transcription factor Fkh2
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 642
Score = 25.0 bits (52), Expect = 9.9
Identities = 12/27 (44%), Positives = 15/27 (55%), Gaps = 1/27 (3%)
Frame = +3
Query: 555 LPHPC-PSTKDTALPPRHPASGLNRSR 632
LP P P KDT++P PAS +R
Sbjct: 337 LPIPILPKMKDTSIPAAEPASSTTSAR 363
>SPCC1906.03 |wtf19||wtf element Wtf19|Schizosaccharomyces pombe|chr
3|||Manual
Length = 393
Score = 25.0 bits (52), Expect = 9.9
Identities = 10/21 (47%), Positives = 13/21 (61%)
Frame = -3
Query: 557 KTPSPESSTNTGGTTEPYSES 495
K P PE ++ G T PYSE+
Sbjct: 27 KGPLPEYNSEDGSTLPPYSEN 47
>SPBC1773.15 |||membrane transporter|Schizosaccharomyces pombe|chr
2|||Manual
Length = 497
Score = 25.0 bits (52), Expect = 9.9
Identities = 10/23 (43%), Positives = 15/23 (65%)
Frame = +1
Query: 469 AMYVAIQAVLSLYGSVVPPVFVL 537
A Y+A + +L + SV+ P FVL
Sbjct: 141 ASYIATRTLLGILESVITPAFVL 163
>SPBC2G5.05 |||transketolase |Schizosaccharomyces pombe|chr
2|||Manual
Length = 685
Score = 25.0 bits (52), Expect = 9.9
Identities = 10/32 (31%), Positives = 14/32 (43%)
Frame = +2
Query: 512 RSYHRYSCWTPATVSSTPVPIYEGYRTPPTPS 607
R+ +CW PA + T Y + TPS
Sbjct: 494 RAMPNINCWRPADGNETSAAYYSALTSDSTPS 525
>SPCC663.12 |cid12||poly|Schizosaccharomyces pombe|chr 3|||Manual
Length = 336
Score = 25.0 bits (52), Expect = 9.9
Identities = 11/37 (29%), Positives = 19/37 (51%)
Frame = +1
Query: 406 LNPKANREKMTQIMFETFNTPAMYVAIQAVLSLYGSV 516
++PK K +++ E T V + A L +YGS+
Sbjct: 31 VSPKIEELKYRKLLLEKLQTHIREVVLDAELQVYGSM 67
>SPCC1620.02 |wtf23||wtf element Wtf23|Schizosaccharomyces pombe|chr
3|||Manual
Length = 368
Score = 25.0 bits (52), Expect = 9.9
Identities = 10/21 (47%), Positives = 13/21 (61%)
Frame = -3
Query: 557 KTPSPESSTNTGGTTEPYSES 495
K P PE ++ G T PYSE+
Sbjct: 27 KGPLPEYNSEDGSTLPPYSEN 47
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,009,887
Number of Sequences: 5004
Number of extensions: 68096
Number of successful extensions: 225
Number of sequences better than 10.0: 27
Number of HSP's better than 10.0 without gapping: 194
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 220
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 307866294
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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