Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0341
         (639 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1039.05c |||conserved fungal protein|Schizosaccharomyces pom...    27   2.3  
SPBC13G1.15c |||dubious|Schizosaccharomyces pombe|chr 2|||Manual       26   5.3  
SPAC1527.01 |mok11|SPAC23D3.15|alpha-1,3-glucan synthase Mok11|S...    25   9.2  
SPCC63.04 |mok14||alpha-1,3-glucan synthase Mok14|Schizosaccharo...    25   9.2  
SPAC6F12.09 |rdp1|rdr1|RNA-directed RNA polymerase Rdp1|Schizosa...    25   9.2  

>SPAC1039.05c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 781

 Score = 27.1 bits (57), Expect = 2.3
 Identities = 13/46 (28%), Positives = 23/46 (50%), Gaps = 1/46 (2%)
 Frame = +3

Query: 45  SETSLRYYKKIR-NRWIVSIWSTTPHKQPPLDLTELNIEKLPIQFV 179
           SE +L+Y  + R N WI   W     + P L    L +++ P++ +
Sbjct: 294 SEEALQYITRSRVNLWIAHYWKDFHPRWPFLHRGTLKVDEAPVELL 339


>SPBC13G1.15c |||dubious|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 111

 Score = 25.8 bits (54), Expect = 5.3
 Identities = 8/30 (26%), Positives = 19/30 (63%)
 Frame = +3

Query: 330 ISCCSSAFNVCFDGYYINFKIWSSVVQIKA 419
           + CC+S  ++ F  YY+++K +  +  I++
Sbjct: 51  VECCASLCSLIFSKYYLHYKTFRILTIIQS 80


>SPAC1527.01 |mok11|SPAC23D3.15|alpha-1,3-glucan synthase
            Mok11|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2397

 Score = 25.0 bits (52), Expect = 9.2
 Identities = 19/58 (32%), Positives = 26/58 (44%), Gaps = 5/58 (8%)
 Frame = +3

Query: 186  YHSDEYHEVLRHESDLPPSISRQLSLHH---KSTWSCR--KEKVTFRNGIHVDISCCS 344
            YH ++YH  L     LP  I   LSLH+   +  W  R   EK    +  ++  S CS
Sbjct: 1278 YHMNDYHGSLAPLYLLPKIIPVALSLHNAEFQGLWPLRNSSEKEEVCSVFNISKSVCS 1335


>SPCC63.04 |mok14||alpha-1,3-glucan synthase
           Mok14|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1369

 Score = 25.0 bits (52), Expect = 9.2
 Identities = 11/28 (39%), Positives = 16/28 (57%)
 Frame = +3

Query: 186 YHSDEYHEVLRHESDLPPSISRQLSLHH 269
           YH ++YH  L    +LP  I   +SLH+
Sbjct: 387 YHINDYHGALAPIYNLPEVIPCAISLHN 414


>SPAC6F12.09 |rdp1|rdr1|RNA-directed RNA polymerase
           Rdp1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1215

 Score = 25.0 bits (52), Expect = 9.2
 Identities = 13/48 (27%), Positives = 22/48 (45%)
 Frame = -3

Query: 169 IGNFSMFNSVKSRGGCL*GVVDQMETIQRFLIFL**RSEVSLVTHCFT 26
           +G+FS  NSV      +       + I RF + +  + ++    HCFT
Sbjct: 566 MGDFSEINSVSKYAARMGQCFSTTKEINRFCVDISLQDDIVRNNHCFT 613


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,400,557
Number of Sequences: 5004
Number of extensions: 44964
Number of successful extensions: 128
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 126
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 128
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 285732116
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)