Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0341
         (639 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

09_02_0469 - 9610883-9611338,9611749-9611871,9612199-9612375,961...    34   0.11 
06_01_0441 + 3130906-3131424,3131847-3132269                           30   1.3  
02_01_0645 + 4820461-4820736,4821034-4821086,4821670-4821876,482...    29   2.4  
07_01_0220 - 1631395-1631496,1632063-1634036                           29   3.1  
12_01_0389 + 3067808-3069121                                           29   4.1  
03_06_0497 - 34332310-34334415                                         28   5.4  
01_03_0148 - 13153782-13154870,13155823-13156672,13156698-13157008     27   9.5  
01_03_0146 + 13120727-13121037,13121063-13121912,13122854-131235...    27   9.5  

>09_02_0469 -
           9610883-9611338,9611749-9611871,9612199-9612375,
           9614416-9614501,9615519-9615678,9616122-9617438,
           9619463-9620428,9621452-9621766
          Length = 1199

 Score = 33.9 bits (74), Expect = 0.11
 Identities = 21/76 (27%), Positives = 45/76 (59%), Gaps = 6/76 (7%)
 Frame = +3

Query: 132 LDLTELNIEKLPIQFVAPYHSDEYHEVLRHE-SDLPPSISRQLSLHHKSTWSCRK-EKVT 305
           LD++ L+I  LP+Q ++ +H  +  ++   E ++LPP IS    L++ +   C+K +++ 
Sbjct: 548 LDVSSLSITALPLQ-ISSFHKLQMLDLSETELTELPPFISNLKGLNYLNLQGCQKLQRLN 606

Query: 306 FRNGIH----VDISCC 341
             + +H    +++SCC
Sbjct: 607 SLHLLHDLHYLNLSCC 622


>06_01_0441 + 3130906-3131424,3131847-3132269
          Length = 313

 Score = 30.3 bits (65), Expect = 1.3
 Identities = 12/30 (40%), Positives = 19/30 (63%)
 Frame = -3

Query: 475 LFVHKLHLHSIHLGQHMWCALICTTELQIL 386
           L  ++LH H IHL  ++ CAL C+  + +L
Sbjct: 280 LMFYRLHAHGIHLVLNLSCALQCSRSVVLL 309


>02_01_0645 +
           4820461-4820736,4821034-4821086,4821670-4821876,
           4821975-4822055,4822137-4822302
          Length = 260

 Score = 29.5 bits (63), Expect = 2.4
 Identities = 20/77 (25%), Positives = 34/77 (44%)
 Frame = +3

Query: 69  KKIRNRWIVSIWSTTPHKQPPLDLTELNIEKLPIQFVAPYHSDEYHEVLRHESDLPPSIS 248
           K+ R RW     S+ P K+ PL++ + +I+    Q       +E  E       LP ++ 
Sbjct: 116 KERRRRWAQRRTSSKPDKKEPLEVEDKDIK----QKAENEEDEESEETHTMPGMLPTNVI 171

Query: 249 RQLSLHHKSTWSCRKEK 299
             L+   K T+S   E+
Sbjct: 172 EMLAAREKQTFSSDSEE 188


>07_01_0220 - 1631395-1631496,1632063-1634036
          Length = 691

 Score = 29.1 bits (62), Expect = 3.1
 Identities = 16/38 (42%), Positives = 19/38 (50%)
 Frame = +2

Query: 17  TKLSETVSY*RNFTSLL*ENKKSLDCFHLVYNPS*TAS 130
           T + E  S  RNF  L    KK  D + + YNPS T S
Sbjct: 623 TPVPELASTHRNFNELASMRKKGFDPYIMSYNPSSTGS 660


>12_01_0389 + 3067808-3069121
          Length = 437

 Score = 28.7 bits (61), Expect = 4.1
 Identities = 13/37 (35%), Positives = 22/37 (59%)
 Frame = +3

Query: 39  VTSETSLRYYKKIRNRWIVSIWSTTPHKQPPLDLTEL 149
           VTS T + Y ++  +RW+ +  S+ P    PL L++L
Sbjct: 22  VTSPTGISYDRRAIHRWLAAGHSSCPVTGHPLSLSDL 58


>03_06_0497 - 34332310-34334415
          Length = 701

 Score = 28.3 bits (60), Expect = 5.4
 Identities = 22/78 (28%), Positives = 39/78 (50%), Gaps = 1/78 (1%)
 Frame = +1

Query: 334 PAVAVLSMFVLMVIILILRFGAQWCKL-RHTTYADQDEWNEDEAYEQKVSYA*SN*VTKV 510
           P + +L++ +L V+IL+L   A    + R   YA+++E  E E    ++SY   +  TK 
Sbjct: 305 PPLIILTILLLSVVILLLAAAAVAALVVRSRRYAEEEEEWEIEYGPHRISYKDLHGATKG 364

Query: 511 EQVTRVPVTFSNILHFVL 564
            +       F ++ H VL
Sbjct: 365 FRDVIGAGGFGSVYHGVL 382


>01_03_0148 - 13153782-13154870,13155823-13156672,13156698-13157008
          Length = 749

 Score = 27.5 bits (58), Expect = 9.5
 Identities = 7/22 (31%), Positives = 16/22 (72%)
 Frame = +3

Query: 75  IRNRWIVSIWSTTPHKQPPLDL 140
           IR  WI+ +W++   ++PP+++
Sbjct: 95  IRKMWIILLWASPTRRRPPVNM 116


>01_03_0146 +
           13120727-13121037,13121063-13121912,13122854-13123561,
           13123596-13123943
          Length = 738

 Score = 27.5 bits (58), Expect = 9.5
 Identities = 7/22 (31%), Positives = 16/22 (72%)
 Frame = +3

Query: 75  IRNRWIVSIWSTTPHKQPPLDL 140
           IR  WI+ +W++   ++PP+++
Sbjct: 95  IRKMWIILLWASPTRRRPPVNM 116


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,355,007
Number of Sequences: 37544
Number of extensions: 257765
Number of successful extensions: 646
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 632
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 646
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1573040476
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)