Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0341
         (639 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_14837| Best HMM Match : UCH (HMM E-Value=1.10002e-42)               29   2.4  
SB_36157| Best HMM Match : 7tm_1 (HMM E-Value=4.8e-18)                 29   3.2  
SB_36154| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.2  
SB_31648| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.2  
SB_4029| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   4.2  
SB_8394| Best HMM Match : zf-C3HC4 (HMM E-Value=8.6e-08)               28   5.6  
SB_25372| Best HMM Match : DoxX (HMM E-Value=0.96)                     28   7.4  
SB_6223| Best HMM Match : Ras (HMM E-Value=0)                          28   7.4  
SB_11967| Best HMM Match : Pollen_allerg_2 (HMM E-Value=1.7)           27   9.7  

>SB_14837| Best HMM Match : UCH (HMM E-Value=1.10002e-42)
          Length = 1712

 Score = 29.5 bits (63), Expect = 2.4
 Identities = 11/25 (44%), Positives = 18/25 (72%)
 Frame = +3

Query: 90  IVSIWSTTPHKQPPLDLTELNIEKL 164
           ++SIWS  PH++  +D T+ N EK+
Sbjct: 236 LISIWSARPHQKTSVDGTDDNEEKI 260


>SB_36157| Best HMM Match : 7tm_1 (HMM E-Value=4.8e-18)
          Length = 474

 Score = 29.1 bits (62), Expect = 3.2
 Identities = 15/36 (41%), Positives = 19/36 (52%)
 Frame = +3

Query: 231 LPPSISRQLSLHHKSTWSCRKEKVTFRNGIHVDISC 338
           LP   +R LS  HK   SC+ ++V  R G H   SC
Sbjct: 366 LPLGYARVLSHSHKDRRSCKGKQVVTRKGDHDRRSC 401


>SB_36154| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 66

 Score = 28.7 bits (61), Expect = 4.2
 Identities = 13/43 (30%), Positives = 23/43 (53%), Gaps = 1/43 (2%)
 Frame = -2

Query: 638 K*CYFQW-VSNKHLFLFFIFVDYIKSKTKCSIFENVTGTLVTC 513
           K C + W V+N  + +FF    Y++   + ++  +V GT  TC
Sbjct: 20  KSCPWSWRVANMLMAVFFALAAYVQGIIRTAVRNHVDGTFKTC 62


>SB_31648| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 656

 Score = 28.7 bits (61), Expect = 4.2
 Identities = 14/42 (33%), Positives = 23/42 (54%)
 Frame = +3

Query: 120 KQPPLDLTELNIEKLPIQFVAPYHSDEYHEVLRHESDLPPSI 245
           K P  D  +LN+     + V  Y S++  E + H+S+LP +I
Sbjct: 600 KLPKSDCNQLNLLNTTARPVVTYSSNDALEWMTHQSELPGNI 641


>SB_4029| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 417

 Score = 28.7 bits (61), Expect = 4.2
 Identities = 10/28 (35%), Positives = 19/28 (67%)
 Frame = +3

Query: 345 SAFNVCFDGYYINFKIWSSVVQIKAHHI 428
           +   + F+ Y+INFK++ +VV+ K  H+
Sbjct: 90  TGMTLTFNYYFINFKVFVNVVKYKLDHV 117


>SB_8394| Best HMM Match : zf-C3HC4 (HMM E-Value=8.6e-08)
          Length = 1631

 Score = 28.3 bits (60), Expect = 5.6
 Identities = 16/55 (29%), Positives = 26/55 (47%)
 Frame = +3

Query: 39  VTSETSLRYYKKIRNRWIVSIWSTTPHKQPPLDLTELNIEKLPIQFVAPYHSDEY 203
           +T E S+R+Y+       + ++   P  +P L        KL   F A YH++EY
Sbjct: 408 LTCEPSIRHYRPC-----IFVYMDIPFGKPDLKFGITGDNKLEFPFKAVYHNNEY 457


>SB_25372| Best HMM Match : DoxX (HMM E-Value=0.96)
          Length = 244

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 9/27 (33%), Positives = 20/27 (74%)
 Frame = +1

Query: 307 LEMAFMLIYPAVAVLSMFVLMVIILIL 387
           ++ AFML+     +L +F+L+V++L++
Sbjct: 59  IKQAFMLLLVVAVMLFLFILLVVVLVV 85


>SB_6223| Best HMM Match : Ras (HMM E-Value=0)
          Length = 1665

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 17/67 (25%), Positives = 37/67 (55%)
 Frame = +1

Query: 367  MVIILILRFGAQWCKLRHTTYADQDEWNEDEAYEQKVSYA*SN*VTKVEQVTRVPVTFSN 546
            +VI  +L FG+ W +L   +Y  +  W +D   ++  SY+ +   +K E   ++ + F +
Sbjct: 1516 LVIPTLLEFGSVWLRLFRHSYKAKLLW-KDLTGQRPRSYSETRWWSKWEVYKQMLLQFGD 1574

Query: 547  ILHFVLD 567
            I+ F+++
Sbjct: 1575 IVGFLIE 1581


>SB_11967| Best HMM Match : Pollen_allerg_2 (HMM E-Value=1.7)
          Length = 1815

 Score = 27.5 bits (58), Expect = 9.7
 Identities = 19/70 (27%), Positives = 37/70 (52%)
 Frame = +3

Query: 72  KIRNRWIVSIWSTTPHKQPPLDLTELNIEKLPIQFVAPYHSDEYHEVLRHESDLPPSISR 251
           ++++ +I  +  + P ++P  +   +NI+KL +    P H++EY+E    E +      R
Sbjct: 53  EVKSGFIGHLQLSIPLRRPKSEPWIINIDKLYLVAGPPLHNNEYNEQQEAEREWIRK-KR 111

Query: 252 QLSLHHKSTW 281
           QL L  +S W
Sbjct: 112 QLDL-LESQW 120


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,199,821
Number of Sequences: 59808
Number of extensions: 313735
Number of successful extensions: 875
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 816
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 875
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1608851125
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)