Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ce--0340
(634 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC32H8.12c |act1|cps8|actin |Schizosaccharomyces pombe|chr 2||... 176 3e-45
SPAC11H11.06 |arp2|SPAC22F8.01|ARP2/3 actin-organizing complex s... 101 7e-23
SPAC630.03 |arp3|act2|actin-like protein Arp3|Schizosaccharomyce... 97 2e-21
SPBC1347.12 |||actin-like protein Arp1 |Schizosaccharomyces pomb... 93 2e-20
SPBP23A10.08 |alp5|arp4|actin-like protein Arp4|Schizosaccharomy... 64 2e-11
SPBC365.10 |||actin-like protein Arp5 |Schizosaccharomyces pombe... 62 6e-11
SPAC23D3.09 |arp42|arp4|SWI/SNF and RSC complex subunit Arp42|Sc... 50 3e-07
SPAC1071.06 |arp9||SWI/SNF and RSC complex subunit Arp9|Schizosa... 35 0.011
SPAC26A3.05 |chc1||clathrin heavy chain Chc1 |Schizosaccharomyce... 32 0.079
SPAC13F5.04c |||endosomal sorting protein |Schizosaccharomyces p... 28 0.97
SPBC1E8.05 |||conserved fungal protein|Schizosaccharomyces pombe... 27 2.3
SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1... 27 3.0
SPBC115.01c |rrp46||exosome subunit Rrp46 |Schizosaccharomyces p... 26 3.9
SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||M... 26 3.9
SPCC645.07 |rgf1||RhoGEF for Rho1, Rgf1|Schizosaccharomyces pomb... 26 5.2
SPAC20G8.05c |cdc15||cell division control protein Cdc15|Schizos... 26 5.2
SPAC821.09 |eng1||endo-1,3-beta-glucanase Eng1|Schizosaccharomyc... 25 6.9
SPBC3D6.02 |but2||But2 family protein But2 |Schizosaccharomyces ... 25 9.1
>SPBC32H8.12c |act1|cps8|actin |Schizosaccharomyces pombe|chr
2|||Manual
Length = 375
Score = 176 bits (428), Expect = 3e-45
Identities = 79/91 (86%), Positives = 83/91 (91%)
Frame = +2
Query: 236 GTEGLLLGDEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTE 415
G + +GDEAQSKRGILTLKYPIEHGIV NWDDMEKIWHHTFYNELRVAPEEHP LLTE
Sbjct: 48 GQKDSYVGDEAQSKRGILTLKYPIEHGIVNNWDDMEKIWHHTFYNELRVAPEEHPCLLTE 107
Query: 416 APLNPKANREKMTQIMFETFNTPAMYVAIQA 508
APLNPK+NREKMTQI+FETFN PA YVAIQA
Sbjct: 108 APLNPKSNREKMTQIIFETFNAPAFYVAIQA 138
Score = 109 bits (261), Expect = 4e-25
Identities = 47/52 (90%), Positives = 51/52 (98%)
Frame = +3
Query: 99 DEEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSY 254
+EE+AALV+DNGSGMCKAGFAGDDAPRAVFPSIVGRPRH G+MVGMGQKDSY
Sbjct: 2 EEEIAALVIDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHHGIMVGMGQKDSY 53
Score = 70.5 bits (165), Expect = 2e-13
Identities = 33/43 (76%), Positives = 36/43 (83%)
Frame = +1
Query: 505 SLLSLYAXGRTTRIVLDFRDGVFHTVPIYEGYALPHAILRFGL 633
++LSLYA GRTT IVLD DGV HTVPIYEGYALPHAI+R L
Sbjct: 138 AVLSLYASGRTTGIVLDSGDGVTHTVPIYEGYALPHAIMRLDL 180
>SPAC11H11.06 |arp2|SPAC22F8.01|ARP2/3 actin-organizing complex
subunit Arp2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 390
Score = 101 bits (243), Expect = 7e-23
Identities = 41/96 (42%), Positives = 69/96 (71%)
Frame = +2
Query: 221 RDGRYGTEGLLLGDEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHP 400
+ G + +++GDEA++ R +L +KYP+E+GI+ ++++M ++W +TF+ +L++ P
Sbjct: 43 KTGNVQIKDVMVGDEAEAVRSLLQVKYPMENGIIRDFEEMNQLWDYTFFEKLKIDPRGRK 102
Query: 401 VLLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQA 508
+LLTE P+NP ANREKM + MFE + +YVAIQA
Sbjct: 103 ILLTEPPMNPVANREKMCETMFERYGFGGVYVAIQA 138
Score = 48.0 bits (109), Expect = 1e-06
Identities = 21/35 (60%), Positives = 26/35 (74%)
Frame = +3
Query: 105 EVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRP 209
E A +V+DNG+G K G+A D+ PR FPSIVGRP
Sbjct: 2 ESAPIVLDNGTGFVKVGYAKDNFPRFQFPSIVGRP 36
Score = 43.2 bits (97), Expect = 3e-05
Identities = 19/40 (47%), Positives = 27/40 (67%)
Frame = +1
Query: 505 SLLSLYAXGRTTRIVLDFRDGVFHTVPIYEGYALPHAILR 624
++LSLYA G ++ +V+D DGV H VP+YE L H + R
Sbjct: 138 AVLSLYAQGLSSGVVVDSGDGVTHIVPVYESVVLNHLVGR 177
>SPAC630.03 |arp3|act2|actin-like protein Arp3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 427
Score = 96.7 bits (230), Expect = 2e-21
Identities = 47/114 (41%), Positives = 65/114 (57%), Gaps = 1/114 (0%)
Frame = +2
Query: 254 LGDEAQSKRGI-LTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNP 430
+G++A K +L YPI HG + NWD ME+ W + + LR PE+H LLTE PLNP
Sbjct: 76 IGNDALKKASAGYSLDYPIRHGQIENWDHMERFWQQSLFKYLRCEPEDHYFLLTEPPLNP 135
Query: 431 KANREKMTQIMFETFNTPAMYVAIQACSRCTRXVVPPVSCWTSATVSSTPCPST 592
NRE +IMFE+FN +Y+A+QA V+ + WTS+ V+ T
Sbjct: 136 PENRENTAEIMFESFNCAGLYIAVQA-------VLALAASWTSSKVTDRSLTGT 182
Score = 41.9 bits (94), Expect = 7e-05
Identities = 20/48 (41%), Positives = 30/48 (62%), Gaps = 2/48 (4%)
Frame = +3
Query: 117 LVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVG--MGQKDSY 254
+++DNG+G K G+AG+DAP VFP+++ R G G + K SY
Sbjct: 8 IIMDNGTGYSKLGYAGNDAPSYVFPTVIA-TRSAGASSGPAVSSKPSY 54
Score = 29.5 bits (63), Expect = 0.42
Identities = 12/27 (44%), Positives = 17/27 (62%)
Frame = +1
Query: 538 TRIVLDFRDGVFHTVPIYEGYALPHAI 618
T V+D DGV H +P+ EGY + +I
Sbjct: 180 TGTVVDSGDGVTHIIPVAEGYVIGSSI 206
>SPBC1347.12 |||actin-like protein Arp1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 379
Score = 93.5 bits (222), Expect = 2e-20
Identities = 40/87 (45%), Positives = 60/87 (68%), Gaps = 1/87 (1%)
Frame = +2
Query: 248 LLLGDEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYN-ELRVAPEEHPVLLTEAPL 424
+ +G EAQ+ RG+L ++ PIE GI+ NW DME+IW + + + +L PEEHP+LLTE PL
Sbjct: 56 MFVGSEAQNLRGLLKIQRPIERGIIQNWSDMEEIWSYIYSDQQLNTLPEEHPLLLTEPPL 115
Query: 425 NPKANREKMTQIMFETFNTPAMYVAIQ 505
N+EK+ + +ET N PA+ ++Q
Sbjct: 116 ANIRNKEKIAEYFYETLNVPALSFSLQ 142
Score = 59.7 bits (138), Expect = 3e-10
Identities = 25/46 (54%), Positives = 33/46 (71%)
Frame = +3
Query: 117 LVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSY 254
+ +DNGSG KAGFAGDD P+ +FP+ VGR +H+ VM QKD +
Sbjct: 12 ICIDNGSGFIKAGFAGDDIPKCLFPTCVGRIKHERVMPSSIQKDMF 57
Score = 49.6 bits (113), Expect = 4e-07
Identities = 21/37 (56%), Positives = 30/37 (81%)
Frame = +1
Query: 508 LLSLYAXGRTTRIVLDFRDGVFHTVPIYEGYALPHAI 618
+L+LYA RTT IVL+ DG+ H+VPIY+G+++P AI
Sbjct: 144 VLALYASARTTGIVLECGDGLTHSVPIYDGFSIPSAI 180
>SPBP23A10.08 |alp5|arp4|actin-like protein Arp4|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 433
Score = 64.1 bits (149), Expect = 2e-11
Identities = 34/94 (36%), Positives = 48/94 (51%), Gaps = 1/94 (1%)
Frame = +2
Query: 227 GRYGTEGLLLGDEAQSKRGI-LTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPV 403
G + L G+E K + +K I +G V NWD +W + +L+ P EHP+
Sbjct: 42 GEFSDGRRLFGEEYIYKSNPGMEIKNAIRNGWVENWDVTVDLWRYGLEQQLKTNPLEHPI 101
Query: 404 LLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQ 505
L+TE NP NR K + MFE+ PA Y+A Q
Sbjct: 102 LITEPFDNPPENRVKTLETMFESLRCPATYLAKQ 135
Score = 40.3 bits (90), Expect = 2e-04
Identities = 16/34 (47%), Positives = 24/34 (70%)
Frame = +3
Query: 102 EEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVG 203
+EV+A+V+D GS + GF+G+D P+ V PS G
Sbjct: 9 DEVSAIVIDPGSKWTRIGFSGEDIPKCVLPSYCG 42
>SPBC365.10 |||actin-like protein Arp5 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 721
Score = 62.1 bits (144), Expect = 6e-11
Identities = 30/95 (31%), Positives = 54/95 (56%), Gaps = 1/95 (1%)
Frame = +2
Query: 221 RDGRYGTEGLLLGDEAQSKRGILTL-KYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEH 397
RD + L+G++ + G ++ + P E +++NWD ME++ +TF +L + EH
Sbjct: 58 RDRKLSRTSTLVGNDTLIEVGSRSIARSPFERNVISNWDLMEQVLDYTFL-KLGIDRMEH 116
Query: 398 PVLLTEAPLNPKANREKMTQIMFETFNTPAMYVAI 502
P+ +TE NP R MT+++FE +N P++ I
Sbjct: 117 PICMTEPLANPTYVRSTMTELLFELYNAPSVAYGI 151
Score = 35.9 bits (79), Expect = 0.005
Identities = 15/32 (46%), Positives = 22/32 (68%)
Frame = +3
Query: 117 LVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPR 212
LV+DNGS +AG+ G+ P+ VF ++V R R
Sbjct: 27 LVIDNGSWQLRAGWGGEKDPKLVFDNLVSRYR 58
>SPAC23D3.09 |arp42|arp4|SWI/SNF and RSC complex subunit
Arp42|Schizosaccharomyces pombe|chr 1|||Manual
Length = 430
Score = 50.0 bits (114), Expect = 3e-07
Identities = 20/66 (30%), Positives = 38/66 (57%)
Frame = +2
Query: 311 HGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNTPAM 490
+GI+ +W+ W +L+V P E+ +++TE NP++ R+++ + FE + PA
Sbjct: 74 NGIIQDWESTLYTWERGLKEKLQVNPTEYAMMITEPSWNPQSVRQQIMEAAFEQLHVPAF 133
Query: 491 YVAIQA 508
Y+ QA
Sbjct: 134 YLTKQA 139
Score = 36.7 bits (81), Expect = 0.003
Identities = 14/34 (41%), Positives = 23/34 (67%)
Frame = +3
Query: 102 EEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVG 203
EE+ +LV+D GS + G+AG+++P + PS G
Sbjct: 8 EEIPSLVIDPGSCWTRFGYAGEESPMTILPSYYG 41
>SPAC1071.06 |arp9||SWI/SNF and RSC complex subunit
Arp9|Schizosaccharomyces pombe|chr 1|||Manual
Length = 523
Score = 34.7 bits (76), Expect = 0.011
Identities = 21/72 (29%), Positives = 32/72 (44%), Gaps = 4/72 (5%)
Frame = +2
Query: 302 PIEHGIVTNWDDMEKIWHHTFYNELRVAPEE----HPVLLTEAPLNPKANREKMTQIMFE 469
PI+ G V +W+ ++ W H Y+ L P + +PV L +RE TQ FE
Sbjct: 113 PIQRGRVVDWEALKAFWKH-LYSLLLKDPNDTTFRYPVCLVIPTYWSLYDRELATQFFFE 171
Query: 470 TFNTPAMYVAIQ 505
P +A +
Sbjct: 172 ECQVPGFTIAYE 183
>SPAC26A3.05 |chc1||clathrin heavy chain Chc1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1666
Score = 31.9 bits (69), Expect = 0.079
Identities = 19/53 (35%), Positives = 31/53 (58%), Gaps = 5/53 (9%)
Frame = +2
Query: 362 FYNELRVAPEEHPVLLTE--APLNPKANREKMTQIMFETFNTPAM---YVAIQ 505
+Y L E+HP+LLT+ A L P+ + ++ +I ++ NTP + VAIQ
Sbjct: 1399 YYRALNFYLEQHPMLLTDLLAALTPRIDHPRVIRIFEKSENTPLILNFMVAIQ 1451
>SPAC13F5.04c |||endosomal sorting protein |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 277
Score = 28.3 bits (60), Expect = 0.97
Identities = 19/66 (28%), Positives = 29/66 (43%)
Frame = -1
Query: 334 IPVSDDSVFDGVFEGQDTSFALCLIS**ESFCPIPTITP*WRGLPTIEGNTARGASSPAK 155
+P + +V +TSFAL S S PT + P +E + +S+PA
Sbjct: 63 LPTQEAAVETNASASHETSFALPTTSPAASLSISPTKSAAVSSEPNVEADVKSLSSTPAA 122
Query: 154 PALHIP 137
P L+ P
Sbjct: 123 PQLNSP 128
>SPBC1E8.05 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 317
Score = 27.1 bits (57), Expect = 2.3
Identities = 15/40 (37%), Positives = 21/40 (52%)
Frame = +2
Query: 458 IMFETFNTPAMYVAIQACSRCTRXVVPPVSCWTSATVSST 577
+ F+ T + Y +QACS CT + S S T+SST
Sbjct: 94 LSFDGGETYSQYFTLQACSTCT---ISTSSLSYSGTISST 130
>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 800
Score = 26.6 bits (56), Expect = 3.0
Identities = 15/45 (33%), Positives = 18/45 (40%)
Frame = -1
Query: 232 PTITP*WRGLPTIEGNTARGASSPAKPALHIPEPLSTTNAATSSS 98
PT+ P P N S P PL+TTN TS+S
Sbjct: 411 PTVPPTSSSTPLTTTNCTTSTSVPYTSTPVTSTPLATTNCTTSTS 455
>SPBC115.01c |rrp46||exosome subunit Rrp46 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 226
Score = 26.2 bits (55), Expect = 3.9
Identities = 10/25 (40%), Positives = 18/25 (72%)
Frame = +2
Query: 404 LLTEAPLNPKANREKMTQIMFETFN 478
+L APL+ + +KM +++FET+N
Sbjct: 181 VLETAPLHAEEVSKKMKELLFETYN 205
>SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 309
Score = 26.2 bits (55), Expect = 3.9
Identities = 13/31 (41%), Positives = 16/31 (51%)
Frame = -1
Query: 238 PIPTITP*WRGLPTIEGNTARGASSPAKPAL 146
P+PT P LPT NT + P+ PAL
Sbjct: 74 PVPTGAP---SLPTSSNNTQQAEERPSMPAL 101
>SPCC645.07 |rgf1||RhoGEF for Rho1, Rgf1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1334
Score = 25.8 bits (54), Expect = 5.2
Identities = 16/58 (27%), Positives = 23/58 (39%), Gaps = 1/58 (1%)
Frame = +1
Query: 397 PSPAH*GSPQPQGQQREDDPDHVRNIQHARHVRRHPSLLSLYAXGRTTRIV-LDFRDG 567
P P S QP Q P H R +++ S S++ +IV L +DG
Sbjct: 61 PLPFRSTSLQPPSSQPPAPPTHQREASPVKNIEHSESFPSVFGTSNNHQIVPLTLKDG 118
>SPAC20G8.05c |cdc15||cell division control protein
Cdc15|Schizosaccharomyces pombe|chr 1|||Manual
Length = 927
Score = 25.8 bits (54), Expect = 5.2
Identities = 12/25 (48%), Positives = 14/25 (56%)
Frame = -2
Query: 255 NKSPSVPYRPSRPDGGAFPRSRGTR 181
+K+PS PY SRP A S TR
Sbjct: 311 SKAPSYPYSSSRPSASASLASSPTR 335
>SPAC821.09 |eng1||endo-1,3-beta-glucanase Eng1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1016
Score = 25.4 bits (53), Expect = 6.9
Identities = 13/33 (39%), Positives = 17/33 (51%)
Frame = +2
Query: 518 CTRXVVPPVSCWTSATVSSTPCPSTKDTHFPTP 616
C + PV +S T S TP P+T + PTP
Sbjct: 833 CDNGALGPVQS-SSTTSSITPTPTTTSSITPTP 864
>SPBC3D6.02 |but2||But2 family protein But2 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 390
Score = 25.0 bits (52), Expect = 9.1
Identities = 10/29 (34%), Positives = 16/29 (55%)
Frame = -2
Query: 633 KSKTQNGVGKCVSFVDGHGVEDTVAEVQH 547
KSK+ K V+ +DG GV +T + +
Sbjct: 31 KSKSNTNTAKSVAILDGVGVNNTFGVISY 59
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,843,268
Number of Sequences: 5004
Number of extensions: 62402
Number of successful extensions: 198
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 170
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 195
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 281707720
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -