Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ce--0340
(634 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_23733| Best HMM Match : No HMM Matches (HMM E-Value=.) 185 2e-47
SB_7190| Best HMM Match : No HMM Matches (HMM E-Value=.) 185 2e-47
SB_56| Best HMM Match : Actin (HMM E-Value=0) 185 2e-47
SB_56628| Best HMM Match : Actin (HMM E-Value=0) 185 2e-47
SB_7187| Best HMM Match : No HMM Matches (HMM E-Value=.) 185 2e-47
SB_23734| Best HMM Match : No HMM Matches (HMM E-Value=.) 111 6e-25
SB_19204| Best HMM Match : No HMM Matches (HMM E-Value=.) 100 1e-21
SB_54| Best HMM Match : Actin (HMM E-Value=0) 84 1e-16
SB_3885| Best HMM Match : Actin (HMM E-Value=0.77) 67 1e-11
SB_27656| Best HMM Match : Actin (HMM E-Value=4.79999e-40) 65 5e-11
SB_6996| Best HMM Match : Actin (HMM E-Value=1.7e-07) 61 6e-10
SB_34957| Best HMM Match : PARP (HMM E-Value=4.4e-12) 60 2e-09
SB_43920| Best HMM Match : SRP-alpha_N (HMM E-Value=4.6) 53 2e-07
SB_49385| Best HMM Match : Actin (HMM E-Value=0.00022) 51 7e-07
SB_13343| Best HMM Match : No HMM Matches (HMM E-Value=.) 42 4e-04
SB_38756| Best HMM Match : No HMM Matches (HMM E-Value=.) 38 0.005
SB_3433| Best HMM Match : Actin (HMM E-Value=0.00011) 34 0.083
SB_37540| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.59
SB_18097| Best HMM Match : NadA (HMM E-Value=2.2) 31 0.59
SB_5400| Best HMM Match : DUF1153 (HMM E-Value=7.8) 31 0.59
SB_47621| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.78
SB_21074| Best HMM Match : NadA (HMM E-Value=2) 31 0.78
SB_15522| Best HMM Match : DUF590 (HMM E-Value=5.8) 31 0.78
SB_38460| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.78
SB_38372| Best HMM Match : RVT_1 (HMM E-Value=0) 31 0.78
SB_2458| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.78
SB_4310| Best HMM Match : RVT_1 (HMM E-Value=5e-28) 31 1.0
SB_35780| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.4
SB_634| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.4
SB_26136| Best HMM Match : Actin (HMM E-Value=7.2e-10) 30 1.8
SB_31419| Best HMM Match : Laminin_EGF (HMM E-Value=7) 29 2.4
SB_56449| Best HMM Match : RVT_1 (HMM E-Value=0.28) 29 3.1
SB_2746| Best HMM Match : RVT_1 (HMM E-Value=1.10002e-42) 29 3.1
SB_2102| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.1
SB_55880| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.1
SB_24270| Best HMM Match : DUF1604 (HMM E-Value=5.2) 29 3.1
SB_11764| Best HMM Match : DSHCT (HMM E-Value=1.9e-27) 29 3.1
SB_10927| Best HMM Match : RVT_1 (HMM E-Value=6.6e-39) 29 3.1
SB_5114| Best HMM Match : RVT_1 (HMM E-Value=1.10002e-42) 29 3.1
SB_19405| Best HMM Match : DMP1 (HMM E-Value=3.8) 29 4.1
SB_58989| Best HMM Match : RVT_1 (HMM E-Value=0) 29 4.1
SB_32601| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.1
SB_37345| Best HMM Match : zf-B_box (HMM E-Value=1.3e-23) 28 5.5
SB_23472| Best HMM Match : HIT (HMM E-Value=0.43) 28 5.5
SB_20462| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.5
SB_18966| Best HMM Match : RVT_1 (HMM E-Value=0.028) 28 5.5
SB_11603| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.5
SB_10843| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.5
SB_25064| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.5
SB_19427| Best HMM Match : RVT_1 (HMM E-Value=7.5e-32) 28 5.5
SB_12041| Best HMM Match : PHD (HMM E-Value=0.001) 28 5.5
SB_12008| Best HMM Match : RVT_1 (HMM E-Value=0) 28 5.5
SB_26105| Best HMM Match : Homeobox (HMM E-Value=1.1e-30) 28 7.2
SB_55640| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.6
SB_36120| Best HMM Match : zf-MIZ (HMM E-Value=3.9) 27 9.6
SB_34116| Best HMM Match : RVT_1 (HMM E-Value=0) 27 9.6
SB_22432| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.6
SB_15607| Best HMM Match : zf-MIZ (HMM E-Value=3.9) 27 9.6
SB_5728| Best HMM Match : Band_41 (HMM E-Value=1e-26) 27 9.6
SB_59500| Best HMM Match : RVT_1 (HMM E-Value=0.015) 27 9.6
SB_51986| Best HMM Match : HLH (HMM E-Value=0.15) 27 9.6
SB_51232| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.6
SB_11067| Best HMM Match : RVT_1 (HMM E-Value=0) 27 9.6
>SB_23733| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 376
Score = 185 bits (451), Expect = 2e-47
Identities = 84/91 (92%), Positives = 87/91 (95%)
Frame = +2
Query: 236 GTEGLLLGDEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTE 415
G + +GDEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTE
Sbjct: 49 GQKDSYVGDEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTE 108
Query: 416 APLNPKANREKMTQIMFETFNTPAMYVAIQA 508
APLNPKANREKMTQIMFETFN+PAMYVAIQA
Sbjct: 109 APLNPKANREKMTQIMFETFNSPAMYVAIQA 139
Score = 112 bits (270), Expect = 2e-25
Identities = 51/54 (94%), Positives = 53/54 (98%)
Frame = +3
Query: 93 MCDEEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSY 254
M D+E+AALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSY
Sbjct: 1 MEDDEIAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSY 54
Score = 69.7 bits (163), Expect = 2e-12
Identities = 32/43 (74%), Positives = 36/43 (83%)
Frame = +1
Query: 505 SLLSLYAXGRTTRIVLDFRDGVFHTVPIYEGYALPHAILRFGL 633
++LSLYA GRTT IV+D DGV HTVPIYEGYALPHAI+R L
Sbjct: 139 AVLSLYASGRTTGIVMDSGDGVTHTVPIYEGYALPHAIIRLDL 181
>SB_7190| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 375
Score = 185 bits (451), Expect = 2e-47
Identities = 84/91 (92%), Positives = 87/91 (95%)
Frame = +2
Query: 236 GTEGLLLGDEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTE 415
G + +GDEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTE
Sbjct: 48 GQKDSYVGDEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTE 107
Query: 416 APLNPKANREKMTQIMFETFNTPAMYVAIQA 508
APLNPKANREKMTQIMFETFN+PAMYVAIQA
Sbjct: 108 APLNPKANREKMTQIMFETFNSPAMYVAIQA 138
Score = 109 bits (263), Expect = 1e-24
Identities = 49/52 (94%), Positives = 52/52 (100%)
Frame = +3
Query: 99 DEEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSY 254
+++VAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSY
Sbjct: 2 EDDVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSY 53
Score = 70.5 bits (165), Expect = 1e-12
Identities = 33/43 (76%), Positives = 36/43 (83%)
Frame = +1
Query: 505 SLLSLYAXGRTTRIVLDFRDGVFHTVPIYEGYALPHAILRFGL 633
++LSLYA GRTT IV+D DGV HTVPIYEGYALPHAILR L
Sbjct: 138 AVLSLYASGRTTGIVMDSGDGVTHTVPIYEGYALPHAILRLDL 180
>SB_56| Best HMM Match : Actin (HMM E-Value=0)
Length = 375
Score = 185 bits (451), Expect = 2e-47
Identities = 84/91 (92%), Positives = 87/91 (95%)
Frame = +2
Query: 236 GTEGLLLGDEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTE 415
G + +GDEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTE
Sbjct: 48 GQKDSYVGDEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTE 107
Query: 416 APLNPKANREKMTQIMFETFNTPAMYVAIQA 508
APLNPKANREKMTQIMFETFN+PAMYVAIQA
Sbjct: 108 APLNPKANREKMTQIMFETFNSPAMYVAIQA 138
Score = 111 bits (266), Expect = 6e-25
Identities = 50/52 (96%), Positives = 52/52 (100%)
Frame = +3
Query: 99 DEEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSY 254
++EVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSY
Sbjct: 2 EDEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSY 53
Score = 70.5 bits (165), Expect = 1e-12
Identities = 33/43 (76%), Positives = 36/43 (83%)
Frame = +1
Query: 505 SLLSLYAXGRTTRIVLDFRDGVFHTVPIYEGYALPHAILRFGL 633
++LSLYA GRTT IV+D DGV HTVPIYEGYALPHAILR L
Sbjct: 138 AVLSLYASGRTTGIVMDSGDGVTHTVPIYEGYALPHAILRLDL 180
>SB_56628| Best HMM Match : Actin (HMM E-Value=0)
Length = 376
Score = 185 bits (451), Expect = 2e-47
Identities = 84/91 (92%), Positives = 87/91 (95%)
Frame = +2
Query: 236 GTEGLLLGDEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTE 415
G + +GDEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTE
Sbjct: 49 GQKDSYVGDEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTE 108
Query: 416 APLNPKANREKMTQIMFETFNTPAMYVAIQA 508
APLNPKANREKMTQIMFETFN+PAMYVAIQA
Sbjct: 109 APLNPKANREKMTQIMFETFNSPAMYVAIQA 139
Score = 117 bits (281), Expect = 9e-27
Identities = 52/54 (96%), Positives = 54/54 (100%)
Frame = +3
Query: 93 MCDEEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSY 254
MCD++VAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSY
Sbjct: 1 MCDDDVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSY 54
Score = 70.5 bits (165), Expect = 1e-12
Identities = 33/43 (76%), Positives = 36/43 (83%)
Frame = +1
Query: 505 SLLSLYAXGRTTRIVLDFRDGVFHTVPIYEGYALPHAILRFGL 633
++LSLYA GRTT IV+D DGV HTVPIYEGYALPHAILR L
Sbjct: 139 AVLSLYASGRTTGIVMDSGDGVTHTVPIYEGYALPHAILRLDL 181
>SB_7187| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 349
Score = 185 bits (451), Expect = 2e-47
Identities = 84/91 (92%), Positives = 87/91 (95%)
Frame = +2
Query: 236 GTEGLLLGDEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTE 415
G + +GDEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTE
Sbjct: 49 GQKDSYVGDEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTE 108
Query: 416 APLNPKANREKMTQIMFETFNTPAMYVAIQA 508
APLNPKANREKMTQIMFETFN+PAMYVAIQA
Sbjct: 109 APLNPKANREKMTQIMFETFNSPAMYVAIQA 139
Score = 112 bits (270), Expect = 2e-25
Identities = 49/54 (90%), Positives = 53/54 (98%)
Frame = +3
Query: 93 MCDEEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSY 254
M D+++AALV+DNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSY
Sbjct: 1 MADDDIAALVIDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSY 54
Score = 48.4 bits (110), Expect = 5e-06
Identities = 24/35 (68%), Positives = 28/35 (80%), Gaps = 2/35 (5%)
Frame = +1
Query: 505 SLLSLYAXGRTTRIVLDFRDGVFHTVPIYE--GYA 603
++LSLYA GRTT IV+D DGV HTVPIYE GY+
Sbjct: 139 AVLSLYASGRTTGIVMDSGDGVSHTVPIYEERGYS 173
>SB_23734| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 338
Score = 111 bits (266), Expect = 6e-25
Identities = 49/52 (94%), Positives = 52/52 (100%)
Frame = +3
Query: 99 DEEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSY 254
D++VAALV+DNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSY
Sbjct: 2 DDDVAALVIDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSY 53
Score = 75.8 bits (178), Expect = 3e-14
Identities = 34/43 (79%), Positives = 36/43 (83%)
Frame = +2
Query: 236 GTEGLLLGDEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTF 364
G + +GDEAQSKRGILTLKYPIEHGIVTNWDDMEKI TF
Sbjct: 48 GQKDSYVGDEAQSKRGILTLKYPIEHGIVTNWDDMEKIMFETF 90
Score = 69.7 bits (163), Expect = 2e-12
Identities = 32/43 (74%), Positives = 36/43 (83%)
Frame = +1
Query: 505 SLLSLYAXGRTTRIVLDFRDGVFHTVPIYEGYALPHAILRFGL 633
++LSLYA GRTT IV+D DGV HTVPIYEGYALPHAI+R L
Sbjct: 101 AVLSLYASGRTTGIVMDSGDGVTHTVPIYEGYALPHAIIRLDL 143
Score = 40.7 bits (91), Expect = 0.001
Identities = 18/24 (75%), Positives = 21/24 (87%)
Frame = +2
Query: 437 NREKMTQIMFETFNTPAMYVAIQA 508
N + M +IMFETFN+PAMYVAIQA
Sbjct: 78 NWDDMEKIMFETFNSPAMYVAIQA 101
>SB_19204| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 411
Score = 100 bits (239), Expect = 1e-21
Identities = 45/99 (45%), Positives = 66/99 (66%), Gaps = 1/99 (1%)
Frame = +2
Query: 215 SGRDGRYGTEGLLLGDEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTF-YNELRVAPE 391
S + G + L++GDEA R +L + YP+++GIV NWDDM+ +W +TF +++ + P
Sbjct: 44 SQKVGDIEVKDLMVGDEASQLRYMLEVNYPMDNGIVRNWDDMKHVWDYTFGESKMNIDPR 103
Query: 392 EHPVLLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQA 508
VLLTE PLNP NREKM ++MFE + +Y+AIQA
Sbjct: 104 NTKVLLTEPPLNPMKNREKMIEVMFENYQFEGVYIAIQA 142
Score = 50.0 bits (114), Expect = 2e-06
Identities = 21/43 (48%), Positives = 29/43 (67%)
Frame = +1
Query: 505 SLLSLYAXGRTTRIVLDFRDGVFHTVPIYEGYALPHAILRFGL 633
++L+LYA G T +V+D DGV H P+YEG+ALPH R +
Sbjct: 142 AVLTLYAQGLLTGVVIDSGDGVTHICPVYEGFALPHLTRRLDI 184
Score = 44.4 bits (100), Expect = 8e-05
Identities = 17/33 (51%), Positives = 24/33 (72%)
Frame = +3
Query: 111 AALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRP 209
+ +V DNG+G K G+AG + P +FPS+VGRP
Sbjct: 7 SVIVCDNGTGFVKCGYAGSNFPAHIFPSMVGRP 39
>SB_54| Best HMM Match : Actin (HMM E-Value=0)
Length = 2486
Score = 83.8 bits (198), Expect = 1e-16
Identities = 37/55 (67%), Positives = 45/55 (81%)
Frame = +2
Query: 344 KIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQA 508
K+W H F ++LRV E+ PVLLTEAPLNPK NRE+M Q+MFE+FN P MYVA+QA
Sbjct: 2130 KMWEHAF-DQLRVRGEDFPVLLTEAPLNPKMNRERMVQLMFESFNVPCMYVAVQA 2183
Score = 59.7 bits (138), Expect = 2e-09
Identities = 23/34 (67%), Positives = 30/34 (88%)
Frame = +3
Query: 117 LVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQ 218
+V+DNGSG CKAG + D++PR VFP+IVGRPRH+
Sbjct: 2097 VVIDNGSGFCKAGLSTDESPRVVFPAIVGRPRHK 2130
Score = 56.8 bits (131), Expect = 1e-08
Identities = 25/43 (58%), Positives = 31/43 (72%)
Frame = +1
Query: 505 SLLSLYAXGRTTRIVLDFRDGVFHTVPIYEGYALPHAILRFGL 633
++++LYA GRTT V D DGV HTVP+Y+GY LPHA R L
Sbjct: 2183 AVMALYASGRTTGTVFDCGDGVSHTVPVYDGYWLPHATQRIDL 2225
>SB_3885| Best HMM Match : Actin (HMM E-Value=0.77)
Length = 152
Score = 67.3 bits (157), Expect = 1e-11
Identities = 31/43 (72%), Positives = 34/43 (79%)
Frame = +1
Query: 505 SLLSLYAXGRTTRIVLDFRDGVFHTVPIYEGYALPHAILRFGL 633
++LSLYA GRTT +V D DGV H VPIYEGYALPHAILR L
Sbjct: 17 AVLSLYASGRTTGVVFDSGDGVSHNVPIYEGYALPHAILRLDL 59
Score = 33.5 bits (73), Expect = 0.15
Identities = 14/17 (82%), Positives = 16/17 (94%)
Frame = +2
Query: 458 IMFETFNTPAMYVAIQA 508
IMFE FN+PA+YVAIQA
Sbjct: 1 IMFEAFNSPAVYVAIQA 17
>SB_27656| Best HMM Match : Actin (HMM E-Value=4.79999e-40)
Length = 367
Score = 64.9 bits (151), Expect = 5e-11
Identities = 25/39 (64%), Positives = 34/39 (87%)
Frame = +2
Query: 392 EHPVLLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQA 508
+HPVLLTEAPLNP+ NREK ++ FETFN PA+++++QA
Sbjct: 126 QHPVLLTEAPLNPRRNREKAAEVFFETFNVPALFISMQA 164
Score = 63.7 bits (148), Expect = 1e-10
Identities = 27/40 (67%), Positives = 35/40 (87%)
Frame = +1
Query: 505 SLLSLYAXGRTTRIVLDFRDGVFHTVPIYEGYALPHAILR 624
++LSLYA GRTT +VLD DGV H+VPIYEG+A+PH+I+R
Sbjct: 164 AVLSLYATGRTTGVVLDAGDGVSHSVPIYEGFAMPHSIMR 203
>SB_6996| Best HMM Match : Actin (HMM E-Value=1.7e-07)
Length = 240
Score = 61.3 bits (142), Expect = 6e-10
Identities = 24/65 (36%), Positives = 42/65 (64%)
Frame = +2
Query: 302 PIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNT 481
PI+ G++ +WD EKI + + ++ HP+L++EA N + REK+T++MFE +N
Sbjct: 3 PIKDGMIEDWDLFEKILDYIYSKNIKSDSALHPLLMSEAAWNTRIKREKLTELMFEKYNV 62
Query: 482 PAMYV 496
PA ++
Sbjct: 63 PAFFL 67
Score = 33.9 bits (74), Expect = 0.11
Identities = 15/40 (37%), Positives = 25/40 (62%)
Frame = +1
Query: 505 SLLSLYAXGRTTRIVLDFRDGVFHTVPIYEGYALPHAILR 624
S+L+ +A GR+ +V+D VP+++GY L AI+R
Sbjct: 71 SVLTAFANGRSNGLVIDSGATQTSAVPVHDGYVLQQAIVR 110
>SB_34957| Best HMM Match : PARP (HMM E-Value=4.4e-12)
Length = 1392
Score = 59.7 bits (138), Expect = 2e-09
Identities = 27/39 (69%), Positives = 29/39 (74%)
Frame = +3
Query: 102 EEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQ 218
E LV+D GS M K GFAGDDAP+ VFP IVGRPRHQ
Sbjct: 1354 EAPTPLVIDVGSHMWKVGFAGDDAPKGVFPPIVGRPRHQ 1392
>SB_43920| Best HMM Match : SRP-alpha_N (HMM E-Value=4.6)
Length = 372
Score = 53.2 bits (122), Expect = 2e-07
Identities = 29/66 (43%), Positives = 36/66 (54%), Gaps = 2/66 (3%)
Frame = +2
Query: 218 GRDGRYGTEGL--LLGDEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPE 391
GR + G E L +GDEA K T K+PI H IV +WD ME+ W + LR PE
Sbjct: 273 GRSAK-GVEDLDFFIGDEAIDKPSYAT-KWPIRHAIVEDWDLMERFWEQCIFKYLRAEPE 330
Query: 392 EHPVLL 409
+H LL
Sbjct: 331 DHYFLL 336
>SB_49385| Best HMM Match : Actin (HMM E-Value=0.00022)
Length = 921
Score = 51.2 bits (117), Expect = 7e-07
Identities = 21/49 (42%), Positives = 32/49 (65%)
Frame = +3
Query: 87 FKMCDEEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVG 233
FK+ A+V+DNG G+ K GFAGD PR + P++VG P+ +++G
Sbjct: 693 FKLDSHYNRAIVLDNGCGISKIGFAGDRVPRIIQPAVVGNPQRFSMLIG 741
Score = 27.9 bits (59), Expect = 7.2
Identities = 14/36 (38%), Positives = 17/36 (47%)
Frame = +1
Query: 511 LSLYAXGRTTRIVLDFRDGVFHTVPIYEGYALPHAI 618
LSLYA G T + L IYEG+ L H +
Sbjct: 770 LSLYASGMTLGVCLSSGFSCTQAAVIYEGHTLNHTL 805
>SB_13343| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 198
Score = 41.9 bits (94), Expect = 4e-04
Identities = 21/39 (53%), Positives = 27/39 (69%)
Frame = -3
Query: 215 MAGPSHDRGEHGARSIISCETGLAHTGAIVYYQRGNFFV 99
MA + D GE+G+ SI+S ETGLAHTGAI+ Q + V
Sbjct: 1 MARSADDGGENGSGSIVSGETGLAHTGAIIDNQSCDIIV 39
>SB_38756| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 220
Score = 38.3 bits (85), Expect = 0.005
Identities = 24/79 (30%), Positives = 40/79 (50%), Gaps = 3/79 (3%)
Frame = +2
Query: 218 GRDGRYGTEGLLLGDEAQSKRGIL-TLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAP-- 388
GR G + GL +G++ S I L+ P + +VT+++ E++ H F + P
Sbjct: 105 GRKGEPDSGGLAVGNDIGSVEMIRWALRTPFDRDVVTHYECQEQVLDHAFSHLGINTPGG 164
Query: 389 EEHPVLLTEAPLNPKANRE 445
HPV++TE NP R+
Sbjct: 165 VNHPVIMTEPVCNPNYCRQ 183
>SB_3433| Best HMM Match : Actin (HMM E-Value=0.00011)
Length = 580
Score = 34.3 bits (75), Expect = 0.083
Identities = 15/44 (34%), Positives = 24/44 (54%), Gaps = 2/44 (4%)
Frame = +2
Query: 248 LLLGDEAQSKRGILTLKY--PIEHGIVTNWDDMEKIWHHTFYNE 373
L +GD+ + + L Y P + G + NWD ++IW +TF E
Sbjct: 272 LFIGDQIEECKDYSALFYVLPFQKGFLVNWDVEKQIWDYTFGKE 315
Score = 27.9 bits (59), Expect = 7.2
Identities = 12/27 (44%), Positives = 19/27 (70%)
Frame = +3
Query: 105 EVAALVVDNGSGMCKAGFAGDDAPRAV 185
++A LV+D G+ K GFA + APR++
Sbjct: 232 KMATLVLDCGACSQKIGFASNQAPRSI 258
>SB_37540| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 120
Score = 31.5 bits (68), Expect = 0.59
Identities = 14/24 (58%), Positives = 16/24 (66%)
Frame = -1
Query: 190 GNTARGASSPAKPALHIPEPLSTT 119
GNT R PAKPAL++P P S T
Sbjct: 80 GNTNRRTRIPAKPALNLPSPPSKT 103
>SB_18097| Best HMM Match : NadA (HMM E-Value=2.2)
Length = 272
Score = 31.5 bits (68), Expect = 0.59
Identities = 19/48 (39%), Positives = 24/48 (50%)
Frame = -3
Query: 281 LFCSVPHLLIRVLLSHTDHHALMAGPSHDRGEHGARSIISCETGLAHT 138
L C ++ V+LSH + H M D +HG RS SCET L T
Sbjct: 213 LTCICCKVMEHVVLSHLNSHTAMNNILSDL-QHGFRSGFSCETQLVPT 259
>SB_5400| Best HMM Match : DUF1153 (HMM E-Value=7.8)
Length = 170
Score = 31.5 bits (68), Expect = 0.59
Identities = 14/24 (58%), Positives = 16/24 (66%)
Frame = -1
Query: 190 GNTARGASSPAKPALHIPEPLSTT 119
GNT R PAKPAL++P P S T
Sbjct: 80 GNTNRRTRIPAKPALNLPSPPSKT 103
>SB_47621| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 591
Score = 31.1 bits (67), Expect = 0.78
Identities = 19/48 (39%), Positives = 24/48 (50%)
Frame = -3
Query: 281 LFCSVPHLLIRVLLSHTDHHALMAGPSHDRGEHGARSIISCETGLAHT 138
L C ++ V+LSH + H M D +HG RS SCET L T
Sbjct: 408 LTCICCKVMEHVVLSHLNSHTAMNNILSDL-QHGFRSGFSCETQLVLT 454
>SB_21074| Best HMM Match : NadA (HMM E-Value=2)
Length = 358
Score = 31.1 bits (67), Expect = 0.78
Identities = 19/48 (39%), Positives = 24/48 (50%)
Frame = -3
Query: 281 LFCSVPHLLIRVLLSHTDHHALMAGPSHDRGEHGARSIISCETGLAHT 138
L C ++ V+LSH + H M D +HG RS SCET L T
Sbjct: 271 LTCICCKVMEHVVLSHLNSHTAMNNILSDL-QHGFRSGFSCETQLVLT 317
>SB_15522| Best HMM Match : DUF590 (HMM E-Value=5.8)
Length = 339
Score = 31.1 bits (67), Expect = 0.78
Identities = 19/48 (39%), Positives = 24/48 (50%)
Frame = -3
Query: 281 LFCSVPHLLIRVLLSHTDHHALMAGPSHDRGEHGARSIISCETGLAHT 138
L C ++ V+LSH + H M D +HG RS SCET L T
Sbjct: 249 LTCICCKVMEHVVLSHLNSHTAMNNILSDL-QHGFRSGFSCETQLVLT 295
>SB_38460| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 181
Score = 31.1 bits (67), Expect = 0.78
Identities = 19/48 (39%), Positives = 24/48 (50%)
Frame = -3
Query: 281 LFCSVPHLLIRVLLSHTDHHALMAGPSHDRGEHGARSIISCETGLAHT 138
L C ++ V+LSH + H M D +HG RS SCET L T
Sbjct: 91 LTCICCKVMEHVVLSHLNSHTAMNNILSDL-QHGFRSGFSCETQLVLT 137
>SB_38372| Best HMM Match : RVT_1 (HMM E-Value=0)
Length = 402
Score = 31.1 bits (67), Expect = 0.78
Identities = 19/48 (39%), Positives = 24/48 (50%)
Frame = -3
Query: 281 LFCSVPHLLIRVLLSHTDHHALMAGPSHDRGEHGARSIISCETGLAHT 138
L C ++ V+LSH + H M D +HG RS SCET L T
Sbjct: 91 LTCICCKVMEHVVLSHLNSHTAMNNILSDL-QHGFRSGFSCETQLVLT 137
>SB_2458| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 458
Score = 31.1 bits (67), Expect = 0.78
Identities = 19/48 (39%), Positives = 24/48 (50%)
Frame = -3
Query: 281 LFCSVPHLLIRVLLSHTDHHALMAGPSHDRGEHGARSIISCETGLAHT 138
L C ++ V+LSH + H M D +HG RS SCET L T
Sbjct: 125 LTCICCKVMEHVVLSHLNSHTAMNNILSDL-QHGFRSGFSCETQLVLT 171
>SB_4310| Best HMM Match : RVT_1 (HMM E-Value=5e-28)
Length = 570
Score = 30.7 bits (66), Expect = 1.0
Identities = 18/48 (37%), Positives = 24/48 (50%)
Frame = -3
Query: 281 LFCSVPHLLIRVLLSHTDHHALMAGPSHDRGEHGARSIISCETGLAHT 138
L C ++ ++LSH + H M D +HG RS SCET L T
Sbjct: 173 LTCICCKVMEHIVLSHLNSHTAMNNILSDL-QHGFRSGFSCETQLVLT 219
>SB_35780| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 749
Score = 30.3 bits (65), Expect = 1.4
Identities = 13/24 (54%), Positives = 16/24 (66%)
Frame = -1
Query: 190 GNTARGASSPAKPALHIPEPLSTT 119
GNT R PAKP+L++P P S T
Sbjct: 540 GNTNRRTRIPAKPSLNLPSPPSKT 563
>SB_634| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 161
Score = 30.3 bits (65), Expect = 1.4
Identities = 19/69 (27%), Positives = 26/69 (37%), Gaps = 2/69 (2%)
Frame = +2
Query: 389 EEHPVLLTEAPLNPKANREKMTQIMFETF--NTPAMYVAIQACSRCTRXVVPPVSCWTSA 562
E P + EA P+ R Q F F P + C RC PP + W ++
Sbjct: 43 EAPPAVPVEAAAGPRPRRSGPQQDNFGGFAQRVPRHQEILSCCCRCCVKPHPPFASWRNS 102
Query: 563 TVSSTPCPS 589
+ T PS
Sbjct: 103 EEARTDRPS 111
>SB_26136| Best HMM Match : Actin (HMM E-Value=7.2e-10)
Length = 543
Score = 29.9 bits (64), Expect = 1.8
Identities = 12/27 (44%), Positives = 16/27 (59%)
Frame = +1
Query: 538 TRIVLDFRDGVFHTVPIYEGYALPHAI 618
T V+D DGV H +P+ EGY + I
Sbjct: 62 TGCVIDSGDGVTHVIPVAEGYVIGSCI 88
>SB_31419| Best HMM Match : Laminin_EGF (HMM E-Value=7)
Length = 186
Score = 29.5 bits (63), Expect = 2.4
Identities = 21/91 (23%), Positives = 38/91 (41%), Gaps = 2/91 (2%)
Frame = -2
Query: 396 CSSGATRSSL*KV*CQIFSMSSQLVTIPCSMGYLRVRIPLLLCASS--PNKSPSVPYRPS 223
CS + + C + ++V CS + V + ++C+ P++ PS
Sbjct: 88 CSPSRAHVDVFPITCSCRCVPHRMVMSMCSPSRVYVDVSPIVCSCRCVPHRVLMSMCSPS 147
Query: 222 RPDGGAFPRSRGTRREEHHLLRNRPCTYRSH 130
R D FP + R HH+L + + R+H
Sbjct: 148 RADVDVFPITCSRRCVFHHVLMSMCSSSRAH 178
>SB_56449| Best HMM Match : RVT_1 (HMM E-Value=0.28)
Length = 419
Score = 29.1 bits (62), Expect = 3.1
Identities = 17/48 (35%), Positives = 24/48 (50%)
Frame = -3
Query: 281 LFCSVPHLLIRVLLSHTDHHALMAGPSHDRGEHGARSIISCETGLAHT 138
L C ++ ++LSH + H L A +HG R +SCET L T
Sbjct: 242 LTCICCKIMEHIVLSHLNKH-LAANNILSIFQHGFRQALSCETQLVLT 288
>SB_2746| Best HMM Match : RVT_1 (HMM E-Value=1.10002e-42)
Length = 330
Score = 29.1 bits (62), Expect = 3.1
Identities = 17/48 (35%), Positives = 24/48 (50%)
Frame = -3
Query: 281 LFCSVPHLLIRVLLSHTDHHALMAGPSHDRGEHGARSIISCETGLAHT 138
L C ++ ++LSH + H L A +HG R +SCET L T
Sbjct: 103 LTCICCKIMEHIVLSHLNKH-LAANNILSIFQHGFRQALSCETQLVLT 149
>SB_2102| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2396
Score = 29.1 bits (62), Expect = 3.1
Identities = 17/48 (35%), Positives = 24/48 (50%)
Frame = -3
Query: 281 LFCSVPHLLIRVLLSHTDHHALMAGPSHDRGEHGARSIISCETGLAHT 138
L C ++ ++LSH + H L A +HG R +SCET L T
Sbjct: 1641 LTCICCKIMEHIVLSHLNKH-LAANNILSIFQHGFRQALSCETQLVLT 1687
>SB_55880| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 859
Score = 29.1 bits (62), Expect = 3.1
Identities = 17/48 (35%), Positives = 24/48 (50%)
Frame = -3
Query: 281 LFCSVPHLLIRVLLSHTDHHALMAGPSHDRGEHGARSIISCETGLAHT 138
L C ++ ++LSH + H L A +HG R +SCET L T
Sbjct: 669 LTCICCKIMEHIVLSHLNKH-LAANNILSIFQHGFRQALSCETQLVLT 715
>SB_24270| Best HMM Match : DUF1604 (HMM E-Value=5.2)
Length = 329
Score = 29.1 bits (62), Expect = 3.1
Identities = 17/48 (35%), Positives = 24/48 (50%)
Frame = -3
Query: 281 LFCSVPHLLIRVLLSHTDHHALMAGPSHDRGEHGARSIISCETGLAHT 138
L C ++ ++LSH + H L A +HG R +SCET L T
Sbjct: 224 LTCICCKIMEHIVLSHLNKH-LAANNILSIFQHGFRQALSCETQLVLT 270
>SB_11764| Best HMM Match : DSHCT (HMM E-Value=1.9e-27)
Length = 1492
Score = 29.1 bits (62), Expect = 3.1
Identities = 17/48 (35%), Positives = 24/48 (50%)
Frame = -3
Query: 281 LFCSVPHLLIRVLLSHTDHHALMAGPSHDRGEHGARSIISCETGLAHT 138
L C ++ ++LSH + H L A +HG R +SCET L T
Sbjct: 1079 LTCICCKIMEHIVLSHLNKH-LAANNILSIFQHGFRQALSCETQLVLT 1125
>SB_10927| Best HMM Match : RVT_1 (HMM E-Value=6.6e-39)
Length = 452
Score = 29.1 bits (62), Expect = 3.1
Identities = 17/48 (35%), Positives = 24/48 (50%)
Frame = -3
Query: 281 LFCSVPHLLIRVLLSHTDHHALMAGPSHDRGEHGARSIISCETGLAHT 138
L C ++ ++LSH + H L A +HG R +SCET L T
Sbjct: 22 LTCICCKIMEHIVLSHLNKH-LAANNILSIFQHGFRQALSCETQLVLT 68
>SB_5114| Best HMM Match : RVT_1 (HMM E-Value=1.10002e-42)
Length = 330
Score = 29.1 bits (62), Expect = 3.1
Identities = 17/48 (35%), Positives = 24/48 (50%)
Frame = -3
Query: 281 LFCSVPHLLIRVLLSHTDHHALMAGPSHDRGEHGARSIISCETGLAHT 138
L C ++ ++LSH + H L A +HG R +SCET L T
Sbjct: 103 LTCICCKIMEHIVLSHLNKH-LAANNILSIFQHGFRQALSCETQLVLT 149
>SB_19405| Best HMM Match : DMP1 (HMM E-Value=3.8)
Length = 551
Score = 28.7 bits (61), Expect = 4.1
Identities = 17/43 (39%), Positives = 21/43 (48%)
Frame = +3
Query: 471 HSTRPPCTSPSKPALAVRVRSYHPYRAGLPRRCLPHRAHLRRI 599
H R PC +P LA+ + P+ LPR HR HL RI
Sbjct: 137 HLARDPCKH--RPHLAITQCEHRPH---LPRTPCEHRLHLARI 174
>SB_58989| Best HMM Match : RVT_1 (HMM E-Value=0)
Length = 885
Score = 28.7 bits (61), Expect = 4.1
Identities = 12/39 (30%), Positives = 24/39 (61%)
Frame = -3
Query: 263 HLLIRVLLSHTDHHALMAGPSHDRGEHGARSIISCETGL 147
H++ + ++SH +HH ++ + +HG R + SCE+ L
Sbjct: 470 HIITKNIVSHLEHHDILY-----KFQHGFRKLRSCESQL 503
>SB_32601| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 292
Score = 28.7 bits (61), Expect = 4.1
Identities = 17/58 (29%), Positives = 27/58 (46%), Gaps = 2/58 (3%)
Frame = +1
Query: 460 HVRNIQHA--RHVRRHPSLLSLYAXGRTTRIVLDFRDGVFHTVPIYEGYALPHAILRF 627
HV++ Q A R RR L ++ D V+H VP Y+G ++ H + +F
Sbjct: 182 HVQHQQAALPRAQRRERELAKTLFIVTVLSLLCWLPDSVYHFVPYYDGKSVQHRVYQF 239
>SB_37345| Best HMM Match : zf-B_box (HMM E-Value=1.3e-23)
Length = 581
Score = 28.3 bits (60), Expect = 5.5
Identities = 13/46 (28%), Positives = 21/46 (45%), Gaps = 1/46 (2%)
Frame = +2
Query: 413 EAPLNPKANREKMTQIMFETFNTPAMYVAIQA-CSRCTRXVVPPVS 547
++P+ P +N + E F P + + C RC +VPP S
Sbjct: 132 DSPMMPGSNVNLFCPLCHEMFANPRLLPCLHTFCKRCLENLVPPRS 177
>SB_23472| Best HMM Match : HIT (HMM E-Value=0.43)
Length = 168
Score = 28.3 bits (60), Expect = 5.5
Identities = 13/42 (30%), Positives = 22/42 (52%)
Frame = -3
Query: 263 HLLIRVLLSHTDHHALMAGPSHDRGEHGARSIISCETGLAHT 138
H++ +++H D H ++ + +HG R SCET L T
Sbjct: 44 HIIFHDIMNHLDTHNILV-----KFQHGFRRFFSCETQLITT 80
>SB_20462| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 130
Score = 28.3 bits (60), Expect = 5.5
Identities = 13/24 (54%), Positives = 15/24 (62%)
Frame = -1
Query: 190 GNTARGASSPAKPALHIPEPLSTT 119
GNT R AKPAL++P P S T
Sbjct: 40 GNTNRRTRIQAKPALNLPSPPSKT 63
>SB_18966| Best HMM Match : RVT_1 (HMM E-Value=0.028)
Length = 252
Score = 28.3 bits (60), Expect = 5.5
Identities = 13/42 (30%), Positives = 22/42 (52%)
Frame = -3
Query: 263 HLLIRVLLSHTDHHALMAGPSHDRGEHGARSIISCETGLAHT 138
H++ +++H D H ++ + +HG R SCET L T
Sbjct: 89 HIIFHDIMNHLDTHNILV-----KFQHGFRRFFSCETQLITT 125
>SB_11603| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 635
Score = 28.3 bits (60), Expect = 5.5
Identities = 13/24 (54%), Positives = 14/24 (58%)
Frame = -1
Query: 190 GNTARGASSPAKPALHIPEPLSTT 119
GNT R PAKP L IP P + T
Sbjct: 68 GNTNRRTRIPAKPTLTIPSPPTKT 91
>SB_10843| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1259
Score = 28.3 bits (60), Expect = 5.5
Identities = 13/30 (43%), Positives = 15/30 (50%)
Frame = +1
Query: 418 SPQPQGQQREDDPDHVRNIQHARHVRRHPS 507
SP P+ R D+P V A HV HPS
Sbjct: 265 SPTPKRCVRFDEPPTVEKYSKASHVTEHPS 294
>SB_25064| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1134
Score = 28.3 bits (60), Expect = 5.5
Identities = 13/42 (30%), Positives = 22/42 (52%)
Frame = -3
Query: 263 HLLIRVLLSHTDHHALMAGPSHDRGEHGARSIISCETGLAHT 138
H++ +++H D H ++ + +HG R SCET L T
Sbjct: 673 HIIFHDIMNHIDTHNILV-----KFQHGFRRFFSCETQLITT 709
>SB_19427| Best HMM Match : RVT_1 (HMM E-Value=7.5e-32)
Length = 698
Score = 28.3 bits (60), Expect = 5.5
Identities = 13/42 (30%), Positives = 22/42 (52%)
Frame = -3
Query: 263 HLLIRVLLSHTDHHALMAGPSHDRGEHGARSIISCETGLAHT 138
H++ +++H D H ++ + +HG R SCET L T
Sbjct: 292 HIIFHDIMNHLDTHNILV-----KFQHGFRRFFSCETQLITT 328
>SB_12041| Best HMM Match : PHD (HMM E-Value=0.001)
Length = 560
Score = 28.3 bits (60), Expect = 5.5
Identities = 13/42 (30%), Positives = 22/42 (52%)
Frame = -3
Query: 263 HLLIRVLLSHTDHHALMAGPSHDRGEHGARSIISCETGLAHT 138
H++ +++H D H ++ + +HG R SCET L T
Sbjct: 503 HIIFHDIMNHLDTHNILV-----KFQHGFRRFFSCETQLITT 539
>SB_12008| Best HMM Match : RVT_1 (HMM E-Value=0)
Length = 979
Score = 28.3 bits (60), Expect = 5.5
Identities = 13/42 (30%), Positives = 22/42 (52%)
Frame = -3
Query: 263 HLLIRVLLSHTDHHALMAGPSHDRGEHGARSIISCETGLAHT 138
H++ +++H D H ++ + +HG R SCET L T
Sbjct: 129 HIIFHDIMNHLDTHNILV-----KFQHGFRRFFSCETQLITT 165
>SB_26105| Best HMM Match : Homeobox (HMM E-Value=1.1e-30)
Length = 315
Score = 27.9 bits (59), Expect = 7.2
Identities = 16/39 (41%), Positives = 19/39 (48%)
Frame = +3
Query: 492 TSPSKPALAVRVRSYHPYRAGLPRRCLPHRAHLRRIRTS 608
TSP K A+ + +YHP L R HRA RTS
Sbjct: 180 TSPVKTESAISIGAYHPSHFALERFHPYHRAFSAFSRTS 218
>SB_55640| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1071
Score = 27.5 bits (58), Expect = 9.6
Identities = 13/36 (36%), Positives = 18/36 (50%), Gaps = 5/36 (13%)
Frame = +2
Query: 518 CTRXVVPPVSCWTSATVSSTPC-----PSTKDTHFP 610
CT+ +P +T T TPC PST+ +H P
Sbjct: 859 CTKRYIPSAKRYTPCTERYTPCTKRYTPSTEPSHAP 894
>SB_36120| Best HMM Match : zf-MIZ (HMM E-Value=3.9)
Length = 209
Score = 27.5 bits (58), Expect = 9.6
Identities = 22/68 (32%), Positives = 31/68 (45%), Gaps = 3/68 (4%)
Frame = -3
Query: 281 LFCSVPHLLIRVLLSHTDHHALMAGPSHDRGEHGARSIISCETGL---AHTGAIVYYQRG 111
L C ++ V+LSH + H L A +HG R+ SCET L H A + + G
Sbjct: 93 LTCLACKVMEHVVLSHLNKH-LAAHNIISNLQHGFRAGFSCETQLILAVHDWASILNKHG 151
Query: 110 NFFVAHLE 87
V L+
Sbjct: 152 QVDVLLLD 159
>SB_34116| Best HMM Match : RVT_1 (HMM E-Value=0)
Length = 522
Score = 27.5 bits (58), Expect = 9.6
Identities = 22/68 (32%), Positives = 31/68 (45%), Gaps = 3/68 (4%)
Frame = -3
Query: 281 LFCSVPHLLIRVLLSHTDHHALMAGPSHDRGEHGARSIISCETGL---AHTGAIVYYQRG 111
L C ++ V+LSH + H L A +HG R+ SCET L H A + + G
Sbjct: 93 LTCLACKVMEHVVLSHLNKH-LAAHNIISNLQHGFRAGFSCETQLILAVHDWASILNKHG 151
Query: 110 NFFVAHLE 87
V L+
Sbjct: 152 QVDVLLLD 159
>SB_22432| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 285
Score = 27.5 bits (58), Expect = 9.6
Identities = 12/37 (32%), Positives = 21/37 (56%)
Frame = -1
Query: 205 LPTIEGNTARGASSPAKPALHIPEPLSTTNAATSSSH 95
L IE + A++P P + +P+ + +AAT +SH
Sbjct: 222 LRRIERSNIPQATAPGTPGVPVPQAVHGVSAATQASH 258
>SB_15607| Best HMM Match : zf-MIZ (HMM E-Value=3.9)
Length = 221
Score = 27.5 bits (58), Expect = 9.6
Identities = 22/68 (32%), Positives = 31/68 (45%), Gaps = 3/68 (4%)
Frame = -3
Query: 281 LFCSVPHLLIRVLLSHTDHHALMAGPSHDRGEHGARSIISCETGL---AHTGAIVYYQRG 111
L C ++ V+LSH + H L A +HG R+ SCET L H A + + G
Sbjct: 126 LTCLACKVMEHVVLSHLNKH-LAAHNIISNLQHGFRAGFSCETQLILAVHDWASILNKHG 184
Query: 110 NFFVAHLE 87
V L+
Sbjct: 185 QVDVLLLD 192
>SB_5728| Best HMM Match : Band_41 (HMM E-Value=1e-26)
Length = 906
Score = 27.5 bits (58), Expect = 9.6
Identities = 16/56 (28%), Positives = 28/56 (50%), Gaps = 1/56 (1%)
Frame = +1
Query: 439 QREDDPDHVRNIQHARHVRRHPSL-LSLYAXGRTTRIVLDFRDGVFHTVPIYEGYA 603
Q+ + H + Q H HPS L + + TT + DFR H+V +++G++
Sbjct: 258 QKHNIKSHNGHDQELTHTCTHPSQQLIVTSSTDTTFRLWDFRTPSIHSVNVFQGHS 313
>SB_59500| Best HMM Match : RVT_1 (HMM E-Value=0.015)
Length = 224
Score = 27.5 bits (58), Expect = 9.6
Identities = 22/68 (32%), Positives = 31/68 (45%), Gaps = 3/68 (4%)
Frame = -3
Query: 281 LFCSVPHLLIRVLLSHTDHHALMAGPSHDRGEHGARSIISCETGL---AHTGAIVYYQRG 111
L C ++ V+LSH + H L A +HG R+ SCET L H A + + G
Sbjct: 43 LTCLACKVMEHVVLSHLNKH-LAAHNIISNLQHGFRAGFSCETQLILAVHDWASILNKHG 101
Query: 110 NFFVAHLE 87
V L+
Sbjct: 102 QVDVLLLD 109
>SB_51986| Best HMM Match : HLH (HMM E-Value=0.15)
Length = 2110
Score = 27.5 bits (58), Expect = 9.6
Identities = 10/27 (37%), Positives = 17/27 (62%)
Frame = +3
Query: 540 PYRAGLPRRCLPHRAHLRRIRTSPRHS 620
PY +GLP+ CL H++ +R++ S
Sbjct: 964 PYLSGLPKCCLQTPDHVKAVRSATERS 990
>SB_51232| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1676
Score = 27.5 bits (58), Expect = 9.6
Identities = 22/68 (32%), Positives = 31/68 (45%), Gaps = 3/68 (4%)
Frame = -3
Query: 281 LFCSVPHLLIRVLLSHTDHHALMAGPSHDRGEHGARSIISCETGL---AHTGAIVYYQRG 111
L C ++ V+LSH + H L A +HG R+ SCET L H A + + G
Sbjct: 715 LTCLACKVMEHVVLSHLNKH-LAAHNIISNLQHGFRAGFSCETQLILAVHDWASILNKHG 773
Query: 110 NFFVAHLE 87
V L+
Sbjct: 774 QVDVLLLD 781
>SB_11067| Best HMM Match : RVT_1 (HMM E-Value=0)
Length = 1176
Score = 27.5 bits (58), Expect = 9.6
Identities = 22/68 (32%), Positives = 31/68 (45%), Gaps = 3/68 (4%)
Frame = -3
Query: 281 LFCSVPHLLIRVLLSHTDHHALMAGPSHDRGEHGARSIISCETGL---AHTGAIVYYQRG 111
L C ++ V+LSH + H L A +HG R+ SCET L H A + + G
Sbjct: 799 LTCLACKVMEHVVLSHLNKH-LAAHNIISNLQHGFRAGFSCETQLILAVHDWASILNKHG 857
Query: 110 NFFVAHLE 87
V L+
Sbjct: 858 QVDVLLLD 865
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,976,084
Number of Sequences: 59808
Number of extensions: 554169
Number of successful extensions: 2085
Number of sequences better than 10.0: 63
Number of HSP's better than 10.0 without gapping: 1771
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2078
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1584657875
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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