Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0338
         (541 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_A0MNZ0 Cluster: NADPH oxidoreductase; n=1; Bombyx mori|...    36   0.45 
UniRef50_Q1J2S1 Cluster: Cupin 2, conserved barrel; n=1; Deinoco...    33   5.6  
UniRef50_A5EH56 Cluster: Putative uncharacterized protein; n=1; ...    32   9.7  

>UniRef50_A0MNZ0 Cluster: NADPH oxidoreductase; n=1; Bombyx
           mori|Rep: NADPH oxidoreductase - Bombyx mori (Silk moth)
          Length = 191

 Score = 36.3 bits (80), Expect = 0.45
 Identities = 15/18 (83%), Positives = 17/18 (94%)
 Frame = -3

Query: 200 RWMNELTAHLVLSGY*SP 147
           RW++ELTAHLVLSGY SP
Sbjct: 158 RWVDELTAHLVLSGYWSP 175



 Score = 32.7 bits (71), Expect = 5.6
 Identities = 19/40 (47%), Positives = 23/40 (57%), Gaps = 1/40 (2%)
 Frame = -2

Query: 216 FLFIA*MDE-RAHSPPGVKWLLKPIDIYNVNAPPTWRYKF 100
           FL +  +DE  AH      W   P  +Y+VNAPPT RYKF
Sbjct: 154 FLLLRWVDELTAHLVLSGYW--SPRHLYDVNAPPTSRYKF 191


>UniRef50_Q1J2S1 Cluster: Cupin 2, conserved barrel; n=1;
           Deinococcus geothermalis DSM 11300|Rep: Cupin 2,
           conserved barrel - Deinococcus geothermalis (strain DSM
           11300)
          Length = 338

 Score = 32.7 bits (71), Expect = 5.6
 Identities = 15/35 (42%), Positives = 24/35 (68%)
 Frame = +1

Query: 34  P*SSNAFRFEGWGCR*NYTETLELISPGGWRIYVV 138
           P +++A++F G     NYTET+ +I+PGGW  + V
Sbjct: 100 PGTAHAYQFLG-----NYTETVGMITPGGWEEFFV 129


>UniRef50_A5EH56 Cluster: Putative uncharacterized protein; n=1;
          Bradyrhizobium sp. BTAi1|Rep: Putative uncharacterized
          protein - Bradyrhizobium sp. (strain BTAi1 / ATCC
          BAA-1182)
          Length = 164

 Score = 31.9 bits (69), Expect = 9.7
 Identities = 13/21 (61%), Positives = 15/21 (71%)
 Frame = +2

Query: 11 YHRPAYFHREAVMRFGLKGGV 73
          Y R AYF  EAV RFG +GG+
Sbjct: 37 YRRRAYFDYEAVTRFGARGGI 57


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 600,300,722
Number of Sequences: 1657284
Number of extensions: 11689308
Number of successful extensions: 20664
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 20107
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 20664
length of database: 575,637,011
effective HSP length: 96
effective length of database: 416,537,747
effective search space used: 34572633001
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)