Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0338
         (541 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF125543-1|ABL73927.1|  475|Tribolium castaneum chitinase 4 prot...    24   0.98 
DQ493452-1|ABF48588.1|  305|Tribolium castaneum hedgehog protein.      23   1.7  
EF633444-1|ABR32189.1|  721|Tribolium castaneum heat shock prote...    21   5.2  
AY884065-1|AAX84206.1|  697|Tribolium castaneum laccase 1 protein.     21   5.2  
AM292367-1|CAL23179.2| 1451|Tribolium castaneum gustatory recept...    21   6.9  

>EF125543-1|ABL73927.1|  475|Tribolium castaneum chitinase 4
           protein.
          Length = 475

 Score = 23.8 bits (49), Expect = 0.98
 Identities = 9/30 (30%), Positives = 16/30 (53%)
 Frame = +1

Query: 40  SSNAFRFEGWGCR*NYTETLELISPGGWRI 129
           + N+ ++ G      Y E +EL   GGW++
Sbjct: 284 AGNSGKYTGEAGMLGYNEIVELQKEGGWKV 313


>DQ493452-1|ABF48588.1|  305|Tribolium castaneum hedgehog protein.
          Length = 305

 Score = 23.0 bits (47), Expect = 1.7
 Identities = 7/11 (63%), Positives = 8/11 (72%)
 Frame = -1

Query: 535 PVRWVPTRWDS 503
           P+RWV   WDS
Sbjct: 264 PIRWVAKLWDS 274


>EF633444-1|ABR32189.1|  721|Tribolium castaneum heat shock protein
           90 protein.
          Length = 721

 Score = 21.4 bits (43), Expect = 5.2
 Identities = 13/38 (34%), Positives = 22/38 (57%)
 Frame = -3

Query: 452 FYESITNLLQLN*ILKRLSVECKMYFFIRQYTTIPGKV 339
           FY+S+TN  + +  +K  SVE ++ F  R    +P +V
Sbjct: 301 FYKSLTNDWEDHLAVKHFSVEGQLEF--RALLFVPRRV 336


>AY884065-1|AAX84206.1|  697|Tribolium castaneum laccase 1 protein.
          Length = 697

 Score = 21.4 bits (43), Expect = 5.2
 Identities = 12/36 (33%), Positives = 13/36 (36%)
 Frame = -2

Query: 534 QCGGYQPGGTHKTSYPPVNMRGKYYCSLL*INYEPF 427
           QCG Y P G        V   G     LL   YE +
Sbjct: 635 QCGDYVPSGNSTVDCDDVGTFGAILKKLLPKVYEDY 670


>AM292367-1|CAL23179.2| 1451|Tribolium castaneum gustatory receptor
           candidate 46 protein.
          Length = 1451

 Score = 21.0 bits (42), Expect = 6.9
 Identities = 12/37 (32%), Positives = 20/37 (54%)
 Frame = +3

Query: 378 IHFTLDTESLKDLI*LQKVRN*FIEVNNNIFLAYLLG 488
           I++TL    LK  +  Q+V+N    V +  FL+ + G
Sbjct: 351 INYTLVFSVLKQYVMQQQVKNFRHSVRSVFFLSEIFG 387


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 144,471
Number of Sequences: 336
Number of extensions: 3189
Number of successful extensions: 5
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 122,585
effective HSP length: 53
effective length of database: 104,777
effective search space used: 13201902
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)