Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0338
         (541 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1827.07c ||SPCP1E11.01c|SPX/EXS domain protein|Schizosacchar...    25   5.4  
SPBC1289.13c |||alpha-1,2-galactosyltransferase|Schizosaccharomy...    25   7.2  
SPBC31F10.16 |||ChAPs family protein|Schizosaccharomyces pombe|c...    25   9.5  

>SPCC1827.07c ||SPCP1E11.01c|SPX/EXS domain
           protein|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 682

 Score = 25.4 bits (53), Expect = 5.4
 Identities = 8/14 (57%), Positives = 12/14 (85%)
 Frame = +1

Query: 346 PGIVVYWRMKKYIL 387
           P IV YWRM++Y++
Sbjct: 395 PVIVPYWRMRRYLI 408


>SPBC1289.13c |||alpha-1,2-galactosyltransferase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 375

 Score = 25.0 bits (52), Expect = 7.2
 Identities = 10/23 (43%), Positives = 12/23 (52%)
 Frame = -3

Query: 71  PHPSNRNALLLHGGNRQGGGINP 3
           PHP N   +LL G N Q    +P
Sbjct: 97  PHPENSKIVLLMGSNAQNDPSSP 119


>SPBC31F10.16 |||ChAPs family protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 679

 Score = 24.6 bits (51), Expect = 9.5
 Identities = 21/63 (33%), Positives = 29/63 (46%)
 Frame = -2

Query: 366 PVHNNTR*SCVR*ITADLTAMRSCLYSTTASVSQKARFLRQMTGPLVAELFLFIA*MDER 187
           P H N     VR I A L   ++C YS   ++ +K R        L+AEL+L    MD  
Sbjct: 235 PTHVNNH--LVRGIFAYLK--QTCRYSAALNLFEKLRVSIPEVSVLLAELYLL---MDHE 287

Query: 186 AHS 178
            H+
Sbjct: 288 VHA 290


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,418,926
Number of Sequences: 5004
Number of extensions: 47383
Number of successful extensions: 76
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 75
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 76
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 221892220
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)