Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0338
         (541 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_03_1530 + 27502546-27502671,27503487-27503561,27504670-275047...    30   1.0  
05_03_0527 - 15025031-15025993                                         30   1.4  
05_03_0524 + 14994170-14995132                                         30   1.4  
01_01_0254 - 2074095-2074100,2074389-2074462,2074572-2074633,207...    28   4.1  
07_03_0618 + 19998470-19998970,19999079-19999517,19999617-199998...    27   9.6  

>07_03_1530 +
           27502546-27502671,27503487-27503561,27504670-27504746,
           27505576-27507522,27508478-27508946,27509898-27510079,
           27510746-27511208,27511295-27511691,27511810-27511937,
           27512106-27512273,27512452-27512559,27512830-27512838
          Length = 1382

 Score = 30.3 bits (65), Expect = 1.0
 Identities = 19/52 (36%), Positives = 27/52 (51%), Gaps = 2/52 (3%)
 Frame = -1

Query: 508 DSQDVLPPSKYARKILLFTSMNQLRTFCN*IK-SLSDSVSSVK-CIFSSAST 359
           D +  LPPSK   + L   S N   T C+ ++   S+S+  VK C  S AS+
Sbjct: 506 DGEAALPPSKRLHRALEAMSANATETICSSLEVQKSESILKVKGCAASGASS 557


>05_03_0527 - 15025031-15025993
          Length = 320

 Score = 29.9 bits (64), Expect = 1.4
 Identities = 11/26 (42%), Positives = 15/26 (57%)
 Frame = -2

Query: 84  VSTATPPFKPKRITASRWK*AGRWYK 7
           +S ++PPFKP R+    W   G W K
Sbjct: 129 LSPSSPPFKPSRVIVRWWAPPGGWCK 154


>05_03_0524 + 14994170-14995132
          Length = 320

 Score = 29.9 bits (64), Expect = 1.4
 Identities = 11/26 (42%), Positives = 15/26 (57%)
 Frame = -2

Query: 84  VSTATPPFKPKRITASRWK*AGRWYK 7
           +S ++PPFKP R+    W   G W K
Sbjct: 129 LSPSSPPFKPSRVIVRWWAPPGGWCK 154


>01_01_0254 -
           2074095-2074100,2074389-2074462,2074572-2074633,
           2074790-2075123,2075271-2075487,2075575-2075685,
           2076304-2076840
          Length = 446

 Score = 28.3 bits (60), Expect = 4.1
 Identities = 13/42 (30%), Positives = 21/42 (50%)
 Frame = +2

Query: 50  RFGLKGGVAVETIRRP*NLYLQVGGAFTL*MSMGFSNHLTPG 175
           + G+ G + V    R   + L +GG     ++MGF+ HL  G
Sbjct: 354 KLGILGALEVIDAARKARIALMIGGMVETRIAMGFAGHLAAG 395


>07_03_0618 +
           19998470-19998970,19999079-19999517,19999617-19999804,
           19999944-20000264
          Length = 482

 Score = 27.1 bits (57), Expect = 9.6
 Identities = 8/17 (47%), Positives = 15/17 (88%)
 Frame = -1

Query: 535 PVRWVPTRWDSQDVLPP 485
           P+++ PTR+D+Q ++PP
Sbjct: 394 PIKFDPTRFDNQSLIPP 410


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,584,314
Number of Sequences: 37544
Number of extensions: 343870
Number of successful extensions: 645
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 632
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 645
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1198356516
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)