Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0338
         (541 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB207270-1|BAE72137.1|  429|Apis mellifera broad-complex protein.      25   0.65 
AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor p...    24   1.1  
DQ869053-1|ABJ09600.1|  459|Apis mellifera capa-like receptor pr...    22   3.5  

>AB207270-1|BAE72137.1|  429|Apis mellifera broad-complex protein.
          Length = 429

 Score = 24.6 bits (51), Expect = 0.65
 Identities = 10/21 (47%), Positives = 16/21 (76%)
 Frame = +2

Query: 230 KGPVICLRNLAFCETEAVVEY 292
           K PVI L+++AF +  A+VE+
Sbjct: 67  KHPVIVLQDVAFSDLHALVEF 87


>AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor
           protein.
          Length = 587

 Score = 23.8 bits (49), Expect = 1.1
 Identities = 10/22 (45%), Positives = 14/22 (63%)
 Frame = -3

Query: 524 GTNPVGLTRRPTPQ*ICEENII 459
           G N VG TRRP+ +  CE  ++
Sbjct: 394 GINRVGSTRRPSRRNSCESQMM 415


>DQ869053-1|ABJ09600.1|  459|Apis mellifera capa-like receptor
           protein.
          Length = 459

 Score = 22.2 bits (45), Expect = 3.5
 Identities = 9/29 (31%), Positives = 16/29 (55%)
 Frame = -2

Query: 291 YSTTASVSQKARFLRQMTGPLVAELFLFI 205
           YS   ++S + R+L ++ GP    L L +
Sbjct: 6   YSFYGNISDELRYLEKVRGPKYLPLTLIV 34


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 168,792
Number of Sequences: 438
Number of extensions: 3348
Number of successful extensions: 4
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 15336375
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)