Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0336
         (589 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_46933| Best HMM Match : Peptidase_M17 (HMM E-Value=0.5)             35   0.057
SB_11738| Best HMM Match : SH3_2 (HMM E-Value=3.7e-32)                 30   1.6  
SB_56940| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   8.6  

>SB_46933| Best HMM Match : Peptidase_M17 (HMM E-Value=0.5)
          Length = 125

 Score = 34.7 bits (76), Expect = 0.057
 Identities = 17/45 (37%), Positives = 27/45 (60%)
 Frame = +1

Query: 121 ATVNIKFQWGLKSSDPEQLPVLVIGQSGHLNQLSWSDVRCKLEPR 255
           A VN+ F     +SDP++   L+IG    L+Q+S+ +   KL+PR
Sbjct: 2   ADVNLVFSVPKTTSDPKERGCLIIGNPASLSQVSFDNFSEKLQPR 46


>SB_11738| Best HMM Match : SH3_2 (HMM E-Value=3.7e-32)
          Length = 2436

 Score = 29.9 bits (64), Expect = 1.6
 Identities = 21/67 (31%), Positives = 31/67 (46%)
 Frame = +1

Query: 193  GQSGHLNQLSWSDVRCKLEPRSLRRHGNEVYLVYQHHRVNPVSCGLEP*HWHRYQHGALV 372
            G + H + L+W  +R  L PR   RHG   + +      + +  GL    WHR +HG   
Sbjct: 1376 GLAEHRHGLAWHRIRHGL-PRHRTRHGLARHRIRSGLARHRIRSGLA---WHRTRHGLAR 1431

Query: 373  MQHLQGL 393
             +  QGL
Sbjct: 1432 HRIRQGL 1438


>SB_56940| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1981

 Score = 27.5 bits (58), Expect = 8.6
 Identities = 10/18 (55%), Positives = 13/18 (72%)
 Frame = +1

Query: 340 HWHRYQHGALVMQHLQGL 393
           H HR+QHGAL+   + GL
Sbjct: 259 HSHRHQHGALICHSVAGL 276


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,670,241
Number of Sequences: 59808
Number of extensions: 298634
Number of successful extensions: 639
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 615
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 639
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1422302661
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)