Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0336
         (589 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U58757-9|AAM75377.1|  503|Caenorhabditis elegans Hypothetical pr...    27   9.9  
U58757-8|AAC47918.3|  506|Caenorhabditis elegans Hypothetical pr...    27   9.9  
U23514-8|AAC46540.2|  467|Caenorhabditis elegans Hypothetical pr...    27   9.9  

>U58757-9|AAM75377.1|  503|Caenorhabditis elegans Hypothetical
           protein C01B10.6b protein.
          Length = 503

 Score = 27.1 bits (57), Expect = 9.9
 Identities = 10/18 (55%), Positives = 13/18 (72%)
 Frame = -2

Query: 489 PCSSRTRRACGTPAL*PH 436
           PC S+ +RACG  AL P+
Sbjct: 354 PCQSKQKRACGQNALSPY 371


>U58757-8|AAC47918.3|  506|Caenorhabditis elegans Hypothetical
           protein C01B10.6a protein.
          Length = 506

 Score = 27.1 bits (57), Expect = 9.9
 Identities = 10/18 (55%), Positives = 13/18 (72%)
 Frame = -2

Query: 489 PCSSRTRRACGTPAL*PH 436
           PC S+ +RACG  AL P+
Sbjct: 357 PCQSKQKRACGQNALSPY 374


>U23514-8|AAC46540.2|  467|Caenorhabditis elegans Hypothetical
           protein F48E8.2 protein.
          Length = 467

 Score = 27.1 bits (57), Expect = 9.9
 Identities = 13/41 (31%), Positives = 18/41 (43%)
 Frame = -3

Query: 251 GSSLQRTSLQES*LRCPDCPMTKTGSCSGSEDFKPHWNFMF 129
           GS    +S  +  L CP C +  T  C   E +K  +  MF
Sbjct: 352 GSDAPGSSEADGVLSCPGCMVELTRDCQRHEIYKTQYRAMF 392


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,257,199
Number of Sequences: 27780
Number of extensions: 212016
Number of successful extensions: 520
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 503
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 519
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1237082886
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)