Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0336
         (589 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g56270.1 68416.m06253 expressed protein contains Pfam PF05701...    27   9.3  
At2g30040.1 68415.m03653 protein kinase family protein contains ...    27   9.3  
At1g64530.1 68414.m07315 RWP-RK domain-containing protein simila...    27   9.3  

>At3g56270.1 68416.m06253 expressed protein contains Pfam PF05701:
           Plant protein of unknown function (DUF827)
          Length = 446

 Score = 27.1 bits (57), Expect = 9.3
 Identities = 14/35 (40%), Positives = 19/35 (54%)
 Frame = +1

Query: 214 QLSWSDVRCKLEPRSLRRHGNEVYLVYQHHRVNPV 318
           QL    +RCK  P+ LR H  E  +V +H   NP+
Sbjct: 116 QLQQQALRCKETPQHLRSHSKE--MVDEHCHRNPL 148


>At2g30040.1 68415.m03653 protein kinase family protein contains
           protein kinase domain, Pfam:PF00069
          Length = 463

 Score = 27.1 bits (57), Expect = 9.3
 Identities = 10/22 (45%), Positives = 16/22 (72%)
 Frame = +2

Query: 347 IVTSTALSSCSTFKGSCPGQNC 412
           I+++T+ SS S  +GSC G+ C
Sbjct: 6   IISNTSSSSSSWIRGSCVGRGC 27


>At1g64530.1 68414.m07315 RWP-RK domain-containing protein similar
           to nodule inception protein [Lotus japonicus]
           GI:6448579; contains Pfam profile: PF02042 RWP-RK domain
          Length = 841

 Score = 27.1 bits (57), Expect = 9.3
 Identities = 11/18 (61%), Positives = 13/18 (72%)
 Frame = +2

Query: 371 SCSTFKGSCPGQNC*SNS 424
           SCS+F GSC G+ C S S
Sbjct: 324 SCSSFDGSCMGKVCMSTS 341


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,709,984
Number of Sequences: 28952
Number of extensions: 202407
Number of successful extensions: 521
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 513
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 521
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1161268208
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)