Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0335
         (638 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q18T95 Cluster: Methyl-accepting chemotaxis sensory tra...    33   5.8  

>UniRef50_Q18T95 Cluster: Methyl-accepting chemotaxis sensory
           transducer precursor; n=2; Desulfitobacterium
           hafniense|Rep: Methyl-accepting chemotaxis sensory
           transducer precursor - Desulfitobacterium hafniense
           (strain DCB-2)
          Length = 653

 Score = 33.1 bits (72), Expect = 5.8
 Identities = 15/54 (27%), Positives = 33/54 (61%)
 Frame = +2

Query: 173 THSLSALVLKFADIGRAASKHSLKINSHLRRKTKSLTPRVIASMRKVR*NSFNE 334
           TH+L  LV+   ++  A + HS++++S     T+SLT +V+ ++ ++   + N+
Sbjct: 339 THNLRGLVVNIQEVASALASHSVQLSSTTEETTESLT-QVVTTINEMAQGNSNQ 391


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 652,482,386
Number of Sequences: 1657284
Number of extensions: 13389090
Number of successful extensions: 29173
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 28340
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 29166
length of database: 575,637,011
effective HSP length: 97
effective length of database: 414,880,463
effective search space used: 47711253245
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)