Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0335
         (638 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBP4H10.09 |rsv1||transcription factor Rsv1 |Schizosaccharomyce...    29   0.43 
SPBC29B5.04c |||conserved fungal protein|Schizosaccharomyces pom...    27   1.7  
SPBC365.07c |||TATA element modulatory factor homolog |Schizosac...    27   2.3  
SPCC1620.11 |mug87||nucleoporin Nic96 homolog|Schizosaccharomyce...    26   4.0  
SPAC30D11.04c |nup124||nucleoporin Nup124|Schizosaccharomyces po...    26   4.0  
SPBC106.16 |||20S proteasome component alpha 4|Schizosaccharomyc...    26   5.3  
SPCC1020.01c |pma2|SPCC1393.01|P-type proton ATPase Pma2 |Schizo...    25   7.0  
SPAC6G9.04 |mug79||meiotically upregulated gene Mug79|Schizosacc...    25   9.2  

>SPBP4H10.09 |rsv1||transcription factor Rsv1 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 428

 Score = 29.5 bits (63), Expect = 0.43
 Identities = 14/42 (33%), Positives = 21/42 (50%)
 Frame = +1

Query: 349 KGSNPLALKEISKSFGRKSPVARPANMNHTPAPDRQQHDSNV 474
           K  +PL    IS+S G  +P   P+N    P+ +R+    NV
Sbjct: 155 KNQDPLRRFSISESAGAAAPTPSPSNSKSPPSENRKNRLQNV 196


>SPBC29B5.04c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 605

 Score = 27.5 bits (58), Expect = 1.7
 Identities = 11/25 (44%), Positives = 17/25 (68%)
 Frame = -1

Query: 371 KAKGLLPLHLPKIR*TNFNEPFSST 297
           +A+G++PLH+P +   N  EP S T
Sbjct: 571 RARGVIPLHIPIVIWFNGEEPISFT 595


>SPBC365.07c |||TATA element modulatory factor homolog
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 547

 Score = 27.1 bits (57), Expect = 2.3
 Identities = 12/35 (34%), Positives = 22/35 (62%)
 Frame = +2

Query: 179 SLSALVLKFADIGRAASKHSLKINSHLRRKTKSLT 283
           S   ++ K    G+A SK+ LK+N+ +++  KSL+
Sbjct: 40  SKDEIIAKLLTEGQALSKNELKLNNTIKQLKKSLS 74


>SPCC1620.11 |mug87||nucleoporin Nic96 homolog|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 851

 Score = 26.2 bits (55), Expect = 4.0
 Identities = 14/29 (48%), Positives = 18/29 (62%)
 Frame = -2

Query: 142 HCQNRFVTTKDGGRRIYYNLAGYSRINAK 56
           H  N   T+KDG  + +Y LAG S INA+
Sbjct: 50  HYLNTVPTSKDGNTKAHYLLAG-SGINAE 77


>SPAC30D11.04c |nup124||nucleoporin Nup124|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1159

 Score = 26.2 bits (55), Expect = 4.0
 Identities = 18/57 (31%), Positives = 29/57 (50%), Gaps = 3/57 (5%)
 Frame = +1

Query: 289  GNRVDEKGSLKFVQRIF--GKCKGSNPLALKEISK-SFGRKSPVARPANMNHTPAPD 450
            GN  +  GS+    + F  G  + SNP +    +  SFG  +P A  A+ + +PAP+
Sbjct: 1073 GNTPNPSGSINNASQAFAFGSGEPSNPASNPPSTGFSFGAATPSAFNASASQSPAPN 1129


>SPBC106.16 |||20S proteasome component alpha 4|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 259

 Score = 25.8 bits (54), Expect = 5.3
 Identities = 10/38 (26%), Positives = 21/38 (55%)
 Frame = +3

Query: 522 EKTWNEEMMKGPNGEVVMADVMKTQETASTEMPLACLD 635
           EK W E + +     + ++ +++  +TAS  + LA +D
Sbjct: 175 EKNWKEGLSRDETIHLAVSSLLEVVQTASGNIELAIMD 212


>SPCC1020.01c |pma2|SPCC1393.01|P-type proton ATPase Pma2
            |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1010

 Score = 25.4 bits (53), Expect = 7.0
 Identities = 16/47 (34%), Positives = 25/47 (53%)
 Frame = -1

Query: 542  FFIPGFFSGNCSTS*VSISTTWLTLESCCCLSGAGV*FMLAGRATGD 402
            F I G+F G   TS V++   W+      CL  AGV ++L+  ++ D
Sbjct: 927  FCIFGWFKGGHQTSIVAVIRIWMYSFGIFCLI-AGVYYILSESSSFD 972


>SPAC6G9.04 |mug79||meiotically upregulated gene
           Mug79|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1318

 Score = 25.0 bits (52), Expect = 9.2
 Identities = 15/45 (33%), Positives = 21/45 (46%)
 Frame = +1

Query: 304 EKGSLKFVQRIFGKCKGSNPLALKEISKSFGRKSPVARPANMNHT 438
           +K SL   +RI GK  G N  A  E+++   RK       +  HT
Sbjct: 237 KKISLSAKRRIQGKYSGENVRARIELARERNRKRDYVSNLSKGHT 281


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,654,417
Number of Sequences: 5004
Number of extensions: 54983
Number of successful extensions: 142
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 139
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 142
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 285732116
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)