Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0335
         (638 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_01_0590 + 4376785-4377009,4378153-4378407,4378514-4378641,437...    28   5.4  
02_03_0012 - 13940583-13940853,13942281-13942509,13945275-139454...    28   7.2  

>02_01_0590 +
           4376785-4377009,4378153-4378407,4378514-4378641,
           4378738-4378779,4378875-4378956,4379035-4379103,
           4379180-4379350,4379430-4379495,4379777-4379845,
           4379928-4380056,4380845-4380881,4380906-4380997,
           4381541-4381602,4381855-4381918
          Length = 496

 Score = 28.3 bits (60), Expect = 5.4
 Identities = 14/30 (46%), Positives = 18/30 (60%)
 Frame = +2

Query: 197 LKFADIGRAASKHSLKINSHLRRKTKSLTP 286
           +K AD G +AS +   IN H +RKT   TP
Sbjct: 172 VKLADFGASASLYDPMINRHGKRKTLVGTP 201


>02_03_0012 -
           13940583-13940853,13942281-13942509,13945275-13945476,
           13945961-13946278,13947321-13947419
          Length = 372

 Score = 27.9 bits (59), Expect = 7.2
 Identities = 14/37 (37%), Positives = 20/37 (54%), Gaps = 2/37 (5%)
 Frame = +1

Query: 349 KGSNPLALKEISKSFGRKSPVARP--ANMNHTPAPDR 453
           KG+   A K   K  G+K+PV+R   A     PAP++
Sbjct: 4   KGAKATAAKSAEKEKGKKAPVSRSSRAGSQEKPAPNK 40


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,832,740
Number of Sequences: 37544
Number of extensions: 379958
Number of successful extensions: 793
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 773
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 793
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1573040476
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)