Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0335
         (638 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_18395| Best HMM Match : Ubiq_cyt_C_chap (HMM E-Value=0.74)          32   0.45 
SB_14941| Best HMM Match : SH3_1 (HMM E-Value=1.1e-12)                 30   1.8  
SB_40037| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.6  
SB_57883| Best HMM Match : 7tm_1 (HMM E-Value=1.6e-10)                 28   7.4  
SB_37365| Best HMM Match : 3-dmu-9_3-mt (HMM E-Value=0.25)             28   7.4  
SB_6687| Best HMM Match : DedA (HMM E-Value=4.1)                       28   7.4  
SB_27836| Best HMM Match : DUF92 (HMM E-Value=2.2e-09)                 27   9.7  

>SB_18395| Best HMM Match : Ubiq_cyt_C_chap (HMM E-Value=0.74)
          Length = 730

 Score = 31.9 bits (69), Expect = 0.45
 Identities = 17/45 (37%), Positives = 24/45 (53%)
 Frame = -3

Query: 507 NVLSLHLHDLVNIGVVLLPVRCRRVIHVSRARHGGLSPKALRYFL 373
           NV  L +HD ++ GVV     CR +   ++A  G L P  +RY L
Sbjct: 462 NVAYLAMHDFIS-GVVKYAQECRSIELFAQAMCGSLDPVVIRYVL 505


>SB_14941| Best HMM Match : SH3_1 (HMM E-Value=1.1e-12)
          Length = 469

 Score = 29.9 bits (64), Expect = 1.8
 Identities = 20/83 (24%), Positives = 31/83 (37%)
 Frame = +1

Query: 262 KKNKIPNAQGNRVDEKGSLKFVQRIFGKCKGSNPLALKEISKSFGRKSPVARPANMNHTP 441
           KK  +P   G R +E   L  V   FG    SN   L+ + +            N +   
Sbjct: 104 KKQPLPKRVGKRTEEDDDLVVVN--FGAVNTSNMETLELVEEEEKENDETEEINNNDQEE 161

Query: 442 APDRQQHDSNVNQVVEMETQDVE 510
            PD    D N+ ++  + T+  E
Sbjct: 162 NPDSDNDDGNITEIKIIVTEASE 184


>SB_40037| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 222

 Score = 28.3 bits (60), Expect = 5.6
 Identities = 22/72 (30%), Positives = 37/72 (51%), Gaps = 7/72 (9%)
 Frame = +1

Query: 262 KKNKIPNAQGNRVDEKGSLKFVQRIFGKCK-------GSNPLALKEISKSFGRKSPVARP 420
           KK K+    GN+ +EK +L+++++  G+         G N    +E++ +   KSP  R 
Sbjct: 67  KKGKLDG--GNKSEEKDNLEYLEKHNGEGDYIDSDDDGENDDNNEEVNITNDDKSPTRRV 124

Query: 421 ANMNHTPAPDRQ 456
           + MNH  A D Q
Sbjct: 125 SAMNHGLAHDGQ 136


>SB_57883| Best HMM Match : 7tm_1 (HMM E-Value=1.6e-10)
          Length = 325

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 11/22 (50%), Positives = 14/22 (63%)
 Frame = +1

Query: 37  HPPFCLFSRLYDCTRLNYNIFA 102
           HP  C FSRL+D TR +  + A
Sbjct: 86  HPDACAFSRLFDVTRYSMYVSA 107


>SB_37365| Best HMM Match : 3-dmu-9_3-mt (HMM E-Value=0.25)
          Length = 423

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 16/49 (32%), Positives = 24/49 (48%), Gaps = 4/49 (8%)
 Frame = +1

Query: 271 KIPNAQGNRVDEKGSLKFVQRIF----GKCKGSNPLALKEISKSFGRKS 405
           K   A G  +D    L + + +F    G+CKG    +LKE+ K   RK+
Sbjct: 45  KTAGASGKTLDAMRYLFYQEGVFVSKLGECKGMETESLKEVVKKSARKA 93


>SB_6687| Best HMM Match : DedA (HMM E-Value=4.1)
          Length = 295

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 17/44 (38%), Positives = 26/44 (59%), Gaps = 1/44 (2%)
 Frame = -1

Query: 398 RPKLFDISFKAKGLLPL-HLPKIR*TNFNEPFSSTRLPWALGIL 270
           R K F+ S+K   LL L  LP+ R  +F +   S R+P ++G+L
Sbjct: 86  RAKAFEQSWKCFLLLSLCPLPQFRGVDFGDSSVSFRVPGSVGVL 129


>SB_27836| Best HMM Match : DUF92 (HMM E-Value=2.2e-09)
          Length = 355

 Score = 27.5 bits (58), Expect = 9.7
 Identities = 15/46 (32%), Positives = 23/46 (50%)
 Frame = +2

Query: 176 HSLSALVLKFADIGRAASKHSLKINSHLRRKTKSLTPRVIASMRKV 313
           H   A ++  A +G  A       +S +    KS TPR+I ++RKV
Sbjct: 171 HDFDASLMAMAVLGALACSCGDTWSSEIGTAIKSHTPRLITTLRKV 216


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,102,368
Number of Sequences: 59808
Number of extensions: 421367
Number of successful extensions: 1108
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1081
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1108
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1608851125
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)