Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0335
         (638 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U80447-2|AAO38637.1|  579|Caenorhabditis elegans Hypothetical pr...    29   2.8  
U80447-1|AAB37806.1|  746|Caenorhabditis elegans Hypothetical pr...    29   2.8  
U50312-4|AAA92321.1|  542|Caenorhabditis elegans Temporarily ass...    28   4.9  
Z81038-14|CAI79153.1|  696|Caenorhabditis elegans Hypothetical p...    27   8.6  
Z81038-13|CAB02755.1|  971|Caenorhabditis elegans Hypothetical p...    27   8.6  

>U80447-2|AAO38637.1|  579|Caenorhabditis elegans Hypothetical
           protein F55F8.2b protein.
          Length = 579

 Score = 29.1 bits (62), Expect = 2.8
 Identities = 15/45 (33%), Positives = 24/45 (53%)
 Frame = +2

Query: 266 KTKSLTPRVIASMRKVR*NSFNEFSASVKGVIPWL*RKYRRALGE 400
           KTK +TP ++A +R V  N+ +  +  +     W  RK R+A  E
Sbjct: 497 KTKYITPEIVARLRSVGDNAIDVLNQKIDETKEWK-RKSRKATRE 540


>U80447-1|AAB37806.1|  746|Caenorhabditis elegans Hypothetical
           protein F55F8.2a protein.
          Length = 746

 Score = 29.1 bits (62), Expect = 2.8
 Identities = 15/45 (33%), Positives = 24/45 (53%)
 Frame = +2

Query: 266 KTKSLTPRVIASMRKVR*NSFNEFSASVKGVIPWL*RKYRRALGE 400
           KTK +TP ++A +R V  N+ +  +  +     W  RK R+A  E
Sbjct: 664 KTKYITPEIVARLRSVGDNAIDVLNQKIDETKEWK-RKSRKATRE 707


>U50312-4|AAA92321.1|  542|Caenorhabditis elegans Temporarily
           assigned gene nameprotein 38 protein.
          Length = 542

 Score = 28.3 bits (60), Expect = 4.9
 Identities = 12/38 (31%), Positives = 20/38 (52%)
 Frame = +1

Query: 253 PPSKKNKIPNAQGNRVDEKGSLKFVQRIFGKCKGSNPL 366
           P   + ++  A  NR D+K   +  + +FGK   +NPL
Sbjct: 124 PAFLEGRVSGAVFNREDDKDEREMYEEVFGKFAWTNPL 161


>Z81038-14|CAI79153.1|  696|Caenorhabditis elegans Hypothetical
           protein C25A1.10b protein.
          Length = 696

 Score = 27.5 bits (58), Expect = 8.6
 Identities = 18/73 (24%), Positives = 28/73 (38%)
 Frame = +1

Query: 253 PPSKKNKIPNAQGNRVDEKGSLKFVQRIFGKCKGSNPLALKEISKSFGRKSPVARPANMN 432
           P     K  ++  +  DEK + K           +   A      S   K PVA+P +  
Sbjct: 302 PKPASKKAESSSDSSDDEKPAAKSTPAKTTPKPTAKKAASSSSDSSDDEKKPVAKPTSAK 361

Query: 433 HTPAPDRQQHDSN 471
            TP P  ++ DS+
Sbjct: 362 ATPKPAAKKADSS 374


>Z81038-13|CAB02755.1|  971|Caenorhabditis elegans Hypothetical
           protein C25A1.10a protein.
          Length = 971

 Score = 27.5 bits (58), Expect = 8.6
 Identities = 18/73 (24%), Positives = 28/73 (38%)
 Frame = +1

Query: 253 PPSKKNKIPNAQGNRVDEKGSLKFVQRIFGKCKGSNPLALKEISKSFGRKSPVARPANMN 432
           P     K  ++  +  DEK + K           +   A      S   K PVA+P +  
Sbjct: 577 PKPASKKAESSSDSSDDEKPAAKSTPAKTTPKPTAKKAASSSSDSSDDEKKPVAKPTSAK 636

Query: 433 HTPAPDRQQHDSN 471
            TP P  ++ DS+
Sbjct: 637 ATPKPAAKKADSS 649


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,877,258
Number of Sequences: 27780
Number of extensions: 316716
Number of successful extensions: 786
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 760
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 786
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1416829972
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)