Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0335
         (638 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g04960.1 68418.m00525 pectinesterase family protein contains ...    32   0.37 
At4g25880.2 68417.m03722 pumilio/Puf RNA-binding domain-containi...    30   1.1  
At4g25880.1 68417.m03721 pumilio/Puf RNA-binding domain-containi...    30   1.1  
At4g28710.1 68417.m04106 myosin heavy chain, putative similar to...    28   4.5  
At1g22450.1 68414.m02806 cytochrome c oxidase subunit 6b, putati...    28   4.5  
At4g18190.1 68417.m02703 purine permease family protein similar ...    27   7.9  
At1g67460.1 68414.m07681 hypothetical protein contains Pfam doma...    27   7.9  

>At5g04960.1 68418.m00525 pectinesterase family protein contains
           Pfam profile: PF01095 pectinesterase
          Length = 564

 Score = 31.9 bits (69), Expect = 0.37
 Identities = 17/43 (39%), Positives = 24/43 (55%), Gaps = 1/43 (2%)
 Frame = -3

Query: 318 QRTFLIDAITLGVRDFVFLRRWELIFKEC-LLAARPMSANFNT 193
           QR F  D + LG  DF+F     ++F++C +L  RPM    NT
Sbjct: 392 QRQFYRDCVILGTVDFIF-GNAAVVFQKCEILPRRPMKGQQNT 433


>At4g25880.2 68417.m03722 pumilio/Puf RNA-binding domain-containing
           protein contains Pfam profile:PF00806 Pumilio-family RNA
           binding domains
          Length = 852

 Score = 30.3 bits (65), Expect = 1.1
 Identities = 15/55 (27%), Positives = 32/55 (58%), Gaps = 3/55 (5%)
 Frame = +1

Query: 310 GSLKFVQRIF---GKCKGSNPLALKEISKSFGRKSPVARPANMNHTPAPDRQQHD 465
           G +++ ++++   G+    +P+ ++   +SFG+  P+A     NHT AP+ Q+ D
Sbjct: 388 GEMQYAEKLYVPPGQPSFPDPMYMQYCQQSFGQMEPLAP---RNHTNAPESQKDD 439


>At4g25880.1 68417.m03721 pumilio/Puf RNA-binding domain-containing
           protein contains Pfam profile:PF00806 Pumilio-family RNA
           binding domains
          Length = 861

 Score = 30.3 bits (65), Expect = 1.1
 Identities = 15/55 (27%), Positives = 32/55 (58%), Gaps = 3/55 (5%)
 Frame = +1

Query: 310 GSLKFVQRIF---GKCKGSNPLALKEISKSFGRKSPVARPANMNHTPAPDRQQHD 465
           G +++ ++++   G+    +P+ ++   +SFG+  P+A     NHT AP+ Q+ D
Sbjct: 388 GEMQYAEKLYVPPGQPSFPDPMYMQYCQQSFGQMEPLAP---RNHTNAPESQKDD 439


>At4g28710.1 68417.m04106 myosin heavy chain, putative similar to
           myosin [Arabidopsis thaliana] gi|499047|emb|CAA84066.
          Length = 899

 Score = 28.3 bits (60), Expect = 4.5
 Identities = 14/34 (41%), Positives = 21/34 (61%)
 Frame = +2

Query: 212 IGRAASKHSLKINSHLRRKTKSLTPRVIASMRKV 313
           +GRAAS+   K  S+L RKT  +  +V  +M+ V
Sbjct: 741 LGRAASRIQRKFRSYLSRKTFLMLRKVATNMQAV 774


>At1g22450.1 68414.m02806 cytochrome c oxidase subunit 6b, putative
           (COX6b) nearly identical to subunit 6b of cytochrome c
           oxidase [Arabidopsis thaliana] GI:6518353
          Length = 191

 Score = 28.3 bits (60), Expect = 4.5
 Identities = 13/41 (31%), Positives = 19/41 (46%)
 Frame = +1

Query: 382 SKSFGRKSPVARPANMNHTPAPDRQQHDSNVNQVVEMETQD 504
           S     ++P A   N   TPA   + +D N ++ V  ET D
Sbjct: 75  STEVASEAPAAAEDNAEETPAAAEENNDENASEEVAEETPD 115


>At4g18190.1 68417.m02703 purine permease family protein similar to
           purine permease [Arabidopsis thaliana] GI:7620007;
           contains Pfam profile PF03151: Domain of unknown
           function, DUF250
          Length = 358

 Score = 27.5 bits (58), Expect = 7.9
 Identities = 20/60 (33%), Positives = 27/60 (45%)
 Frame = -3

Query: 480 LVNIGVVLLPVRCRRVIHVSRARHGGLSPKALRYFL*SQGITPFTLAENSLNEFQRTFLI 301
           L + G++ LPV    +I  S+     +      YFL SQ ITPF L    L     T L+
Sbjct: 97  LYSFGLLYLPVSTFSLISASQLAFNAV----FSYFLNSQKITPFILNSLVLLTISSTLLV 152


>At1g67460.1 68414.m07681 hypothetical protein contains Pfam domain
           PF03193: Protein of unknown function, DUF258
          Length = 434

 Score = 27.5 bits (58), Expect = 7.9
 Identities = 14/40 (35%), Positives = 26/40 (65%), Gaps = 1/40 (2%)
 Frame = -3

Query: 351 FTLAENSLNEFQRT-FLIDAITLGVRDFVFLRRWELIFKE 235
           F+L +  ++ F  T FL++A ++G+R  V L + EL+ +E
Sbjct: 173 FSLDQPKIDPFTLTRFLVEAESIGIRITVALNKCELVTQE 212


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,018,853
Number of Sequences: 28952
Number of extensions: 293959
Number of successful extensions: 638
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 629
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 638
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1314848736
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)