Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0333
         (717 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_UPI00006CAF6E Cluster: hypothetical protein TTHERM_0046...    34   4.0  
UniRef50_Q55FA9 Cluster: Putative uncharacterized protein; n=1; ...    33   9.3  

>UniRef50_UPI00006CAF6E Cluster: hypothetical protein
           TTHERM_00466100; n=1; Tetrahymena thermophila SB210|Rep:
           hypothetical protein TTHERM_00466100 - Tetrahymena
           thermophila SB210
          Length = 1068

 Score = 33.9 bits (74), Expect = 4.0
 Identities = 28/81 (34%), Positives = 42/81 (51%), Gaps = 1/81 (1%)
 Frame = +3

Query: 414 IQIINVLPS-Y*RPFLRTKNFILDGASYVLFIIVKTLIAMLIIF*SFNKIISALSLYMLK 590
           IQ  N+L + Y    L+  NFI+D  S ++ I V T    +    SF  I+S +  Y+L 
Sbjct: 68  IQYFNILVNIYLALALQAPNFIIDSTSILVQIGVLTFSFGI----SFFSILSLILSYILI 123

Query: 591 LLNKIISTTQL*LSYRKKKNK 653
            + K  ST QL  +Y K +N+
Sbjct: 124 FIYKYNSTKQLVENYEKYQNQ 144


>UniRef50_Q55FA9 Cluster: Putative uncharacterized protein; n=1;
           Dictyostelium discoideum AX4|Rep: Putative
           uncharacterized protein - Dictyostelium discoideum AX4
          Length = 1047

 Score = 32.7 bits (71), Expect = 9.3
 Identities = 16/31 (51%), Positives = 18/31 (58%), Gaps = 2/31 (6%)
 Frame = +2

Query: 464 KKFHSRWRFIRFIYNC--ENFNCNVNYILVI 550
           K FH  +  IRFI N    NFNCN NY  +I
Sbjct: 455 KNFHKYFEIIRFIRNYIFNNFNCNENYSKLI 485


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 572,624,616
Number of Sequences: 1657284
Number of extensions: 10254989
Number of successful extensions: 15120
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 14645
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 15115
length of database: 575,637,011
effective HSP length: 98
effective length of database: 413,223,179
effective search space used: 57851245060
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)