Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0333
         (717 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1783.01 |||FAD binding protein|Schizosaccharomyces pombe|chr...    27   2.7  
SPAC23G3.06 |||U3 snoRNP protein Nop58 |Schizosaccharomyces pomb...    27   3.5  
SPAC1782.01 ||SPAPYUG7.07|proteasome component|Schizosaccharomyc...    26   6.2  

>SPAC1783.01 |||FAD binding protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 583

 Score = 27.1 bits (57), Expect = 2.7
 Identities = 16/46 (34%), Positives = 18/46 (39%), Gaps = 2/46 (4%)
 Frame = +2

Query: 407 KVNTNYKCITILLKALSPNKKFHS--RWRFIRFIYNCENFNCNVNY 538
           KV T+YKC        S    FHS     F R +YN      N  Y
Sbjct: 14  KVRTSYKCFVKYFPKCSVQSSFHSYDELAFSRRLYNLPRTLLNSRY 59


>SPAC23G3.06 |||U3 snoRNP protein Nop58 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 508

 Score = 26.6 bits (56), Expect = 3.5
 Identities = 13/29 (44%), Positives = 18/29 (62%)
 Frame = +1

Query: 631 VIEKKKTKLSIIRPAWGECKKKTYRKNSE 717
           VIEKKK K S ++ A GE  KK  ++  +
Sbjct: 450 VIEKKKKKSSKLKEADGESSKKEKKEKKD 478


>SPAC1782.01 ||SPAPYUG7.07|proteasome component|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1679

 Score = 25.8 bits (54), Expect = 6.2
 Identities = 12/36 (33%), Positives = 19/36 (52%), Gaps = 1/36 (2%)
 Frame = +2

Query: 245 FTNRICS-FFINLYDHARSNILCTALICIITDCINT 349
           F    C  FF    D+ +++  C  L  I+TDC+N+
Sbjct: 821 FVKSTCPIFFQKQLDNYKADHYCFTLDFILTDCVNS 856


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,591,660
Number of Sequences: 5004
Number of extensions: 49877
Number of successful extensions: 77
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 76
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 77
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 335201398
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)