Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0332
         (306 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q1ACG8 Cluster: Putative uncharacterized protein orf98a...    31   3.8  
UniRef50_Q75HR8 Cluster: Putative uncharacterized protein P0628H...    31   6.7  

>UniRef50_Q1ACG8 Cluster: Putative uncharacterized protein orf98a;
           n=1; Chara vulgaris|Rep: Putative uncharacterized
           protein orf98a - Chara vulgaris (Common stonewort)
          Length = 98

 Score = 31.5 bits (68), Expect = 3.8
 Identities = 13/38 (34%), Positives = 24/38 (63%)
 Frame = -2

Query: 287 YFFWIVILYYVILRKLVRLSVMNQSISTFNNYRYLFVL 174
           Y + I+ LYY+I+  +V   + ++ I+ F  Y +LF+L
Sbjct: 34  YIYIILYLYYIIIYIIVLFIIKHRKINVFYCYLFLFLL 71


>UniRef50_Q75HR8 Cluster: Putative uncharacterized protein
           P0628H02.7; n=1; Oryza sativa (japonica
           cultivar-group)|Rep: Putative uncharacterized protein
           P0628H02.7 - Oryza sativa subsp. japonica (Rice)
          Length = 356

 Score = 30.7 bits (66), Expect = 6.7
 Identities = 14/44 (31%), Positives = 26/44 (59%), Gaps = 2/44 (4%)
 Frame = -2

Query: 284 FFWIVIL-YYVILRKLVRLSVMNQSIS-TFNNYRYLFVLSETVL 159
           F+WI++L YY+I+ +L     ++ + S     YRY  VL+  ++
Sbjct: 61  FYWIILLFYYIIISRLPSYHYLHWTYSRLLKPYRYRLVLASAII 104


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 243,454,010
Number of Sequences: 1657284
Number of extensions: 3410501
Number of successful extensions: 5807
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 5743
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5807
length of database: 575,637,011
effective HSP length: 78
effective length of database: 446,368,859
effective search space used: 10266483757
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)