Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0332
         (306 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_01_0374 - 2843405-2843508,2844134-2844239,2844327-2844409,284...    29   0.55 
01_06_1685 + 39170428-39171735                                         25   8.9  

>11_01_0374 -
           2843405-2843508,2844134-2844239,2844327-2844409,
           2844886-2845078,2845527-2845662,2846185-2846264,
           2846348-2846932,2847058-2847126,2847203-2847347,
           2847442-2847542,2848208-2849066,2849397-2849536,
           2849606-2849783,2849885-2850287,2850770-2850833,
           2851223-2851278,2851470-2851572
          Length = 1134

 Score = 29.5 bits (63), Expect = 0.55
 Identities = 14/32 (43%), Positives = 20/32 (62%)
 Frame = -2

Query: 257 VILRKLVRLSVMNQSISTFNNYRYLFVLSETV 162
           ++L  L  L++MN  I  F + RYLF L+ TV
Sbjct: 725 LVLSLLFMLTIMNVPIKYFPHSRYLFALAPTV 756


>01_06_1685 + 39170428-39171735
          Length = 435

 Score = 25.4 bits (53), Expect = 8.9
 Identities = 13/32 (40%), Positives = 17/32 (53%)
 Frame = -1

Query: 195 LPLSIRAIGDSANAHDGAAVRSGANHSDKR*P 100
           LPL    +GD A+ HD A   S    +DK+ P
Sbjct: 357 LPLDFFKVGDLASVHDLATYISLLRGADKKQP 388


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,273,433
Number of Sequences: 37544
Number of extensions: 88879
Number of successful extensions: 151
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 151
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 151
length of database: 14,793,348
effective HSP length: 71
effective length of database: 12,127,724
effective search space used: 363831720
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)