Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ce--0331
(670 letters)
Database: uniref50
1,657,284 sequences; 575,637,011 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
UniRef50_P46776 Cluster: 60S ribosomal protein L27a; n=204; Euka... 108 1e-22
UniRef50_A1BQ56 Cluster: Ribosomal protein L27a; n=4; Bilateria|... 99 5e-20
UniRef50_Q00V89 Cluster: 60s ribosomal protein L15/L27; n=2; Ost... 97 3e-19
UniRef50_Q9LR33 Cluster: 60S ribosomal protein L27a-2; n=56; Euk... 97 3e-19
UniRef50_Q00454 Cluster: 60S ribosomal protein L27a; n=3; Eukary... 90 5e-17
UniRef50_Q8GEG0 Cluster: Putative uncharacterized protein; n=1; ... 79 1e-13
UniRef50_UPI0000498F17 Cluster: beta-galactosidase; n=3; Eukaryo... 78 2e-13
UniRef50_Q47336 Cluster: LacZ-alpha peptide; n=2; cellular organ... 77 4e-13
UniRef50_P00722 Cluster: Beta-galactosidase; n=35; root|Rep: Bet... 74 3e-12
UniRef50_Q37953 Cluster: LacZ protein; n=1; Phage M13mp18|Rep: L... 73 8e-12
UniRef50_Q9AW02 Cluster: 60S ribosomal protein L27A; n=3; Eukary... 66 5e-10
UniRef50_A7QSF4 Cluster: Chromosome chr12 scaffold_159, whole ge... 57 3e-07
UniRef50_Q4P992 Cluster: Putative uncharacterized protein; n=1; ... 56 6e-07
UniRef50_Q669R9 Cluster: Beta-galactosidase; n=14; Yersinia|Rep:... 54 4e-06
UniRef50_O62581 Cluster: 60S ribosomal protein L27a; n=1; Enceph... 50 4e-05
UniRef50_A7MN76 Cluster: Putative uncharacterized protein; n=1; ... 50 5e-05
UniRef50_Q9LPV3 Cluster: Putative 60S ribosomal protein L27a-1; ... 46 6e-04
UniRef50_P06219 Cluster: Beta-galactosidase; n=11; Gammaproteoba... 44 0.003
UniRef50_P53143 Cluster: Putative uncharacterized protein YGL102... 42 0.013
UniRef50_Q3LW97 Cluster: Ribosomal protein L27a; n=1; Bigelowiel... 41 0.024
UniRef50_P81650 Cluster: Beta-galactosidase; n=26; Gammaproteoba... 39 0.095
UniRef50_Q48727 Cluster: Beta-galactosidase; n=3; Lactococcus la... 37 0.51
UniRef50_UPI0000F1EDC6 Cluster: PREDICTED: hypothetical protein;... 34 3.6
UniRef50_A4ANL3 Cluster: Putative lipoprotein; n=1; Flavobacteri... 34 3.6
UniRef50_A0UVE2 Cluster: Glycoside hydrolase family 2, TIM barre... 34 3.6
UniRef50_UPI0000DA3FAD Cluster: PREDICTED: similar to 60S riboso... 33 6.2
UniRef50_Q15XN9 Cluster: Glycoside hydrolase family 2, TIM barre... 33 6.2
UniRef50_Q9ZQM0 Cluster: Putative non-LTR retroelement reverse t... 33 6.2
UniRef50_Q232P0 Cluster: MHCK/EF2 kinase domain family protein; ... 33 6.2
>UniRef50_P46776 Cluster: 60S ribosomal protein L27a; n=204;
Eukaryota|Rep: 60S ribosomal protein L27a - Homo sapiens
(Human)
Length = 148
Score = 108 bits (259), Expect = 1e-22
Identities = 45/81 (55%), Positives = 56/81 (69%)
Frame = +2
Query: 11 PPQKRRLGKLRGHVSXXXXXXXXXXXXXXXXXNAGGEHHHRINMDKYHPGYFGKLGMRNF 190
P + R+ KLRGHVS NAGG HHHRIN DKYHPGYFGK+GM+++
Sbjct: 2 PSRLRKTRKLRGHVSHGHGRIGKHRKHPGGRGNAGGLHHHRINFDKYHPGYFGKVGMKHY 61
Query: 191 HFRKNKNFCPVLNLDKLWTLV 253
H ++N++FCP +NLDKLWTLV
Sbjct: 62 HLKRNQSFCPTVNLDKLWTLV 82
Score = 45.6 bits (103), Expect = 0.001
Identities = 28/88 (31%), Positives = 38/88 (43%)
Frame = +1
Query: 187 FPL*KEQEFLSSFELR*ALDISLEQTRLKYASAPDGKVPVINIVKAXXXXXXXXXXXPKQ 366
+ L + Q F + L + EQTR+ A G P+I++V++ PKQ
Sbjct: 61 YHLKRNQSFCPTVNLDKLWTLVSEQTRVNAAKNKTGAAPIIDVVRSGYYKVLGKGKLPKQ 120
Query: 367 PVIVXXXXXXXXXXXXXXDVGGACVLSA 450
PVIV VGGACVL A
Sbjct: 121 PVIVKAKFFSRRAEEKIKSVGGACVLVA 148
>UniRef50_A1BQ56 Cluster: Ribosomal protein L27a; n=4;
Bilateria|Rep: Ribosomal protein L27a - Ascaris suum
(Pig roundworm) (Ascaris lumbricoides)
Length = 133
Score = 99 bits (238), Expect = 5e-20
Identities = 39/49 (79%), Positives = 44/49 (89%)
Frame = +2
Query: 107 NAGGEHHHRINMDKYHPGYFGKLGMRNFHFRKNKNFCPVLNLDKLWTLV 253
NAGG+HHHRIN DKYHPGYFGK+GMRNFH RKN +CP +NLDKLW+LV
Sbjct: 20 NAGGQHHHRINFDKYHPGYFGKVGMRNFHVRKNGLYCPTVNLDKLWSLV 68
Score = 45.6 bits (103), Expect = 0.001
Identities = 27/65 (41%), Positives = 31/65 (47%)
Frame = +1
Query: 256 EQTRLKYASAPDGKVPVINIVKAXXXXXXXXXXXPKQPVIVXXXXXXXXXXXXXXDVGGA 435
E+TR YA D K PVI++VKA PKQPVIV VGGA
Sbjct: 70 EKTRTTYAEKKD-KAPVIDVVKAGYFKVLGKGLLPKQPVIVKAKFFSRTAEQKIKGVGGA 128
Query: 436 CVLSA 450
C+L A
Sbjct: 129 CILVA 133
>UniRef50_Q00V89 Cluster: 60s ribosomal protein L15/L27; n=2;
Ostreococcus|Rep: 60s ribosomal protein L15/L27 -
Ostreococcus tauri
Length = 198
Score = 97.1 bits (231), Expect = 3e-19
Identities = 42/73 (57%), Positives = 48/73 (65%)
Frame = +2
Query: 35 KLRGHVSXXXXXXXXXXXXXXXXXNAGGEHHHRINMDKYHPGYFGKLGMRNFHFRKNKNF 214
K RGHVS AGG+HHHRI MDKYHPGYFGK+GMR+FH KN+
Sbjct: 61 KKRGHVSAGHGRIGKHRKHPAGRGMAGGQHHHRIMMDKYHPGYFGKVGMRHFHKLKNQTV 120
Query: 215 CPVLNLDKLWTLV 253
CP +N+DKLWTLV
Sbjct: 121 CPTINIDKLWTLV 133
>UniRef50_Q9LR33 Cluster: 60S ribosomal protein L27a-2; n=56;
Eukaryota|Rep: 60S ribosomal protein L27a-2 -
Arabidopsis thaliana (Mouse-ear cress)
Length = 146
Score = 97.1 bits (231), Expect = 3e-19
Identities = 43/73 (58%), Positives = 48/73 (65%)
Frame = +2
Query: 35 KLRGHVSXXXXXXXXXXXXXXXXXNAGGEHHHRINMDKYHPGYFGKLGMRNFHFRKNKNF 214
K RGHVS NAGG HHHRI DKYHPGYFGK+GMR FH +NK F
Sbjct: 10 KKRGHVSAGHGRIGKHRKHPGGRGNAGGMHHHRILFDKYHPGYFGKVGMRYFHKLRNKFF 69
Query: 215 CPVLNLDKLWTLV 253
CP++NLDKLW+LV
Sbjct: 70 CPIVNLDKLWSLV 82
>UniRef50_Q00454 Cluster: 60S ribosomal protein L27a; n=3;
Eukaryota|Rep: 60S ribosomal protein L27a - Tetrahymena
thermophila
Length = 149
Score = 89.8 bits (213), Expect = 5e-17
Identities = 41/79 (51%), Positives = 50/79 (63%), Gaps = 2/79 (2%)
Frame = +2
Query: 23 RRLGKLRGHVSXXXXXXXXXXXXXXXXXN--AGGEHHHRINMDKYHPGYFGKLGMRNFHF 196
++ KLRGHVS AGG HHHRI M+K+HPGY+GKLGMR FH
Sbjct: 6 KKTRKLRGHVSHGHGRVGKHRKGGCRGGRGKAGGMHHHRILMEKWHPGYYGKLGMRTFHL 65
Query: 197 RKNKNFCPVLNLDKLWTLV 253
+KN CPV+N+DKLW+LV
Sbjct: 66 KKNPLHCPVVNIDKLWSLV 84
Score = 41.1 bits (92), Expect = 0.024
Identities = 25/65 (38%), Positives = 30/65 (46%)
Frame = +1
Query: 256 EQTRLKYASAPDGKVPVINIVKAXXXXXXXXXXXPKQPVIVXXXXXXXXXXXXXXDVGGA 435
+ TR KYA KVPVI++ KA P QPV+V VGGA
Sbjct: 86 DATRQKYAEDKK-KVPVIDVTKAGFFKVLGKGRLPNQPVVVKAKYFSKTAERRIVAVGGA 144
Query: 436 CVLSA 450
CVL+A
Sbjct: 145 CVLTA 149
>UniRef50_Q8GEG0 Cluster: Putative uncharacterized protein; n=1;
Erwinia amylovora|Rep: Putative uncharacterized protein
- Erwinia amylovora (Fire blight bacteria)
Length = 123
Score = 78.6 bits (185), Expect = 1e-13
Identities = 36/42 (85%), Positives = 38/42 (90%)
Frame = +2
Query: 521 SESYYNSLAVVLQRRDWENPGVTQLNRLAAHSPFASWRNNRK 646
SESYY LAVVLQRRDWENPGVTQLNRLAAH PFASWRN+ +
Sbjct: 62 SESYYG-LAVVLQRRDWENPGVTQLNRLAAHPPFASWRNSEE 102
>UniRef50_UPI0000498F17 Cluster: beta-galactosidase; n=3;
Eukaryota|Rep: beta-galactosidase - Entamoeba
histolytica HM-1:IMSS
Length = 86
Score = 77.8 bits (183), Expect = 2e-13
Identities = 34/36 (94%), Positives = 36/36 (100%)
Frame = +3
Query: 540 HWPSFYNVVTGKTLALPNLIALQHIPLSPAGVITEK 647
HWPSFYNVVTGKTLALPNLIALQHIPLSPAGVI+E+
Sbjct: 5 HWPSFYNVVTGKTLALPNLIALQHIPLSPAGVISEE 40
>UniRef50_Q47336 Cluster: LacZ-alpha peptide; n=2; cellular
organisms|Rep: LacZ-alpha peptide - Escherichia coli
Length = 90
Score = 77.0 bits (181), Expect = 4e-13
Identities = 35/42 (83%), Positives = 37/42 (88%)
Frame = +2
Query: 521 SESYYNSLAVVLQRRDWENPGVTQLNRLAAHSPFASWRNNRK 646
S S NSLAVVLQRRDWENPGVTQLNRLAAH PFASWRN+ +
Sbjct: 15 SSSPGNSLAVVLQRRDWENPGVTQLNRLAAHPPFASWRNSEE 56
>UniRef50_P00722 Cluster: Beta-galactosidase; n=35; root|Rep:
Beta-galactosidase - Escherichia coli (strain K12)
Length = 1024
Score = 74.1 bits (174), Expect = 3e-12
Identities = 32/37 (86%), Positives = 35/37 (94%)
Frame = +2
Query: 536 NSLAVVLQRRDWENPGVTQLNRLAAHSPFASWRNNRK 646
+SLAVVLQRRDWENPGVTQLNRLAAH PFASWRN+ +
Sbjct: 6 DSLAVVLQRRDWENPGVTQLNRLAAHPPFASWRNSEE 42
>UniRef50_Q37953 Cluster: LacZ protein; n=1; Phage M13mp18|Rep: LacZ
protein - Phage M13mp18
Length = 102
Score = 72.5 bits (170), Expect = 8e-12
Identities = 31/36 (86%), Positives = 34/36 (94%)
Frame = +2
Query: 539 SLAVVLQRRDWENPGVTQLNRLAAHSPFASWRNNRK 646
+LAVVLQRRDWENPGVTQLNRLAAH PFASWRN+ +
Sbjct: 25 ALAVVLQRRDWENPGVTQLNRLAAHPPFASWRNSEE 60
>UniRef50_Q9AW02 Cluster: 60S ribosomal protein L27A; n=3;
Eukaryota|Rep: 60S ribosomal protein L27A - Guillardia
theta (Cryptomonas phi)
Length = 144
Score = 66.5 bits (155), Expect = 5e-10
Identities = 32/77 (41%), Positives = 40/77 (51%)
Frame = +2
Query: 11 PPQKRRLGKLRGHVSXXXXXXXXXXXXXXXXXNAGGEHHHRINMDKYHPGYFGKLGMRNF 190
P RR K RGHVS N+GG+HHH+I +KYH +FGK GMR +
Sbjct: 2 PTDIRRSRKKRGHVSSGHGRVGKHRKHPGGRGNSGGQHHHKIFFEKYHKKHFGKTGMRYY 61
Query: 191 HFRKNKNFCPVLNLDKL 241
K NF +NLDK+
Sbjct: 62 RKLKQNNFNKSINLDKI 78
>UniRef50_A7QSF4 Cluster: Chromosome chr12 scaffold_159, whole
genome shotgun sequence; n=3; Vitis vinifera|Rep:
Chromosome chr12 scaffold_159, whole genome shotgun
sequence - Vitis vinifera (Grape)
Length = 151
Score = 57.2 bits (132), Expect = 3e-07
Identities = 21/37 (56%), Positives = 31/37 (83%)
Frame = +2
Query: 143 DKYHPGYFGKLGMRNFHFRKNKNFCPVLNLDKLWTLV 253
DK+HPG FGK+GMR+FH + K CP++++DKLW++V
Sbjct: 28 DKHHPGNFGKVGMRHFHKLRIKLHCPIVHIDKLWSMV 64
>UniRef50_Q4P992 Cluster: Putative uncharacterized protein; n=1;
Ustilago maydis|Rep: Putative uncharacterized protein -
Ustilago maydis (Smut fungus)
Length = 187
Score = 56.4 bits (130), Expect = 6e-07
Identities = 23/46 (50%), Positives = 31/46 (67%)
Frame = +2
Query: 116 GEHHHRINMDKYHPGYFGKLGMRNFHFRKNKNFCPVLNLDKLWTLV 253
G ++ + YFGK+GMR+FH +N +F PV+NLDKLWTLV
Sbjct: 77 GSQEMEVDREIGRDSYFGKVGMRHFHLTRNSSFRPVVNLDKLWTLV 122
Score = 44.8 bits (101), Expect = 0.002
Identities = 21/49 (42%), Positives = 23/49 (46%)
Frame = +2
Query: 11 PPQKRRLGKLRGHVSXXXXXXXXXXXXXXXXXNAGGEHHHRINMDKYHP 157
P + K RGHVS AGG+HHHR NMDKYHP
Sbjct: 2 PTHLSKTRKHRGHVSAGNGRVGKHRKHPGGRGLAGGQHHHRTNMDKYHP 50
>UniRef50_Q669R9 Cluster: Beta-galactosidase; n=14; Yersinia|Rep:
Beta-galactosidase - Yersinia pseudotuberculosis
Length = 1066
Score = 53.6 bits (123), Expect = 4e-06
Identities = 24/44 (54%), Positives = 30/44 (68%), Gaps = 4/44 (9%)
Frame = +2
Query: 539 SLAVVLQRRDWENPGVTQLNRLAAHSPFASWRN----NRKRPAP 658
SL +L RRDWENP +TQ +RL AH PF SWR+ + RP+P
Sbjct: 14 SLPQILSRRDWENPQITQYHRLEAHPPFHSWRDVESAQKDRPSP 57
>UniRef50_O62581 Cluster: 60S ribosomal protein L27a; n=1;
Encephalitozoon cuniculi|Rep: 60S ribosomal protein L27a
- Encephalitozoon cuniculi
Length = 147
Score = 50.4 bits (115), Expect = 4e-05
Identities = 23/77 (29%), Positives = 38/77 (49%)
Frame = +2
Query: 23 RRLGKLRGHVSXXXXXXXXXXXXXXXXXNAGGEHHHRINMDKYHPGYFGKLGMRNFHFRK 202
++ KLRGHVS AGG H + ++HP Y GK GMR +H ++
Sbjct: 6 KKTRKLRGHVSHGYGRVGKHRKHSGGRGLAGGFSHMKTFFTRFHPDYHGKRGMRVYHRKE 65
Query: 203 NKNFCPVLNLDKLWTLV 253
N ++ ++ +LW ++
Sbjct: 66 NSDYARPISSARLWGMI 82
>UniRef50_A7MN76 Cluster: Putative uncharacterized protein; n=1;
Enterobacter sakazakii ATCC BAA-894|Rep: Putative
uncharacterized protein - Enterobacter sakazakii ATCC
BAA-894
Length = 1043
Score = 50.0 bits (114), Expect = 5e-05
Identities = 18/44 (40%), Positives = 28/44 (63%)
Frame = +2
Query: 506 TNSPYSESYYNSLAVVLQRRDWENPGVTQLNRLAAHSPFASWRN 637
T + ++E LA +L R DW+NP +T +NRL +H+P WR+
Sbjct: 6 TTTAFNELQTRPLATILARNDWQNPAITSVNRLPSHTPLHGWRD 49
>UniRef50_Q9LPV3 Cluster: Putative 60S ribosomal protein L27a-1;
n=1; Arabidopsis thaliana|Rep: Putative 60S ribosomal
protein L27a-1 - Arabidopsis thaliana (Mouse-ear cress)
Length = 104
Score = 46.4 bits (105), Expect = 6e-04
Identities = 21/48 (43%), Positives = 30/48 (62%), Gaps = 2/48 (4%)
Frame = +2
Query: 125 HHRINMDKYHPGYFGK--LGMRNFHFRKNKNFCPVLNLDKLWTLVLNR 262
H R + PG G +GMR FH +NK +C ++NLDKLW++VL +
Sbjct: 19 HGRFGKHRKLPGSRGNAGVGMRYFHKLRNKFYCQIVNLDKLWSMVLGK 66
>UniRef50_P06219 Cluster: Beta-galactosidase; n=11;
Gammaproteobacteria|Rep: Beta-galactosidase - Klebsiella
pneumoniae
Length = 1034
Score = 44.0 bits (99), Expect = 0.003
Identities = 20/42 (47%), Positives = 23/42 (54%)
Frame = +2
Query: 512 SPYSESYYNSLAVVLQRRDWENPGVTQLNRLAAHSPFASWRN 637
S S+ VL R DW N +T LNRL AH FASWR+
Sbjct: 4 SDTGRSHTPDFHAVLAREDWHNQTITHLNRLPAHPVFASWRD 45
>UniRef50_P53143 Cluster: Putative uncharacterized protein YGL102C;
n=2; Saccharomycetaceae|Rep: Putative uncharacterized
protein YGL102C - Saccharomyces cerevisiae (Baker's
yeast)
Length = 142
Score = 41.9 bits (94), Expect = 0.013
Identities = 21/65 (32%), Positives = 33/65 (50%)
Frame = -1
Query: 253 D*CPKLI*VQNWTEILVLSKVEISHTKFAKVSRMVLVHVDXXXXXXXXXXXXXXXXXVLS 74
D CP+ + VQ+W + L VE+SHT +++ MV +HV+ VL+
Sbjct: 71 DQCPQFVQVQDWLPEMSLLLVEVSHTNLTEITWMVFIHVNSVVMLTTGHTSTTGVLSVLT 130
Query: 73 DTTMS 59
DTT +
Sbjct: 131 DTTFT 135
>UniRef50_Q3LW97 Cluster: Ribosomal protein L27a; n=1; Bigelowiella
natans|Rep: Ribosomal protein L27a - Bigelowiella natans
(Pedinomonas minutissima) (Chlorarachnion sp.(strain
CCMP 621))
Length = 151
Score = 41.1 bits (92), Expect = 0.024
Identities = 19/59 (32%), Positives = 27/59 (45%)
Frame = +2
Query: 35 KLRGHVSXXXXXXXXXXXXXXXXXNAGGEHHHRINMDKYHPGYFGKLGMRNFHFRKNKN 211
K+RG S +GG+HHH+I ++Y YF K GMR ++ K N
Sbjct: 10 KMRGKNSSGHGRINKHRKNPGGKGKSGGQHHHKIIFERYRETYFRKTGMRIYNLEKTLN 68
>UniRef50_P81650 Cluster: Beta-galactosidase; n=26;
Gammaproteobacteria|Rep: Beta-galactosidase -
Pseudoalteromonas haloplanktis (Alteromonas
haloplanktis)
Length = 1039
Score = 39.1 bits (87), Expect = 0.095
Identities = 15/32 (46%), Positives = 22/32 (68%)
Frame = +2
Query: 539 SLAVVLQRRDWENPGVTQLNRLAAHSPFASWR 634
SL ++ RRDWENP Q+N++ AHSP ++
Sbjct: 3 SLQHIINRRDWENPITVQVNQVKAHSPLNGFK 34
>UniRef50_Q48727 Cluster: Beta-galactosidase; n=3; Lactococcus
lactis|Rep: Beta-galactosidase - Lactococcus lactis
subsp. lactis (Streptococcus lactis)
Length = 998
Score = 36.7 bits (81), Expect = 0.51
Identities = 14/23 (60%), Positives = 18/23 (78%)
Frame = +2
Query: 551 VLQRRDWENPGVTQLNRLAAHSP 619
VL+R+DWENP V+ NRL H+P
Sbjct: 9 VLERKDWENPVVSNWNRLPMHTP 31
>UniRef50_UPI0000F1EDC6 Cluster: PREDICTED: hypothetical protein;
n=1; Danio rerio|Rep: PREDICTED: hypothetical protein -
Danio rerio
Length = 195
Score = 33.9 bits (74), Expect = 3.6
Identities = 14/14 (100%), Positives = 14/14 (100%)
Frame = +2
Query: 539 SLAVVLQRRDWENP 580
SLAVVLQRRDWENP
Sbjct: 178 SLAVVLQRRDWENP 191
>UniRef50_A4ANL3 Cluster: Putative lipoprotein; n=1;
Flavobacteriales bacterium HTCC2170|Rep: Putative
lipoprotein - Flavobacteriales bacterium HTCC2170
Length = 535
Score = 33.9 bits (74), Expect = 3.6
Identities = 16/32 (50%), Positives = 19/32 (59%)
Frame = -3
Query: 440 TQAPPTSLIFFSADFEKNFAFTMTGCLGSLPL 345
T A SL FFS D + N A T GCLG+ P+
Sbjct: 306 TDAEGNSLYFFSLDTKDNSACTSAGCLGAWPV 337
>UniRef50_A0UVE2 Cluster: Glycoside hydrolase family 2, TIM barrel;
n=1; Clostridium cellulolyticum H10|Rep: Glycoside
hydrolase family 2, TIM barrel - Clostridium
cellulolyticum H10
Length = 1033
Score = 33.9 bits (74), Expect = 3.6
Identities = 11/25 (44%), Positives = 18/25 (72%)
Frame = +2
Query: 563 RDWENPGVTQLNRLAAHSPFASWRN 637
R+WEN +TQ+NR HSP+ ++ +
Sbjct: 3 REWENQYITQINRYPMHSPYGAYES 27
>UniRef50_UPI0000DA3FAD Cluster: PREDICTED: similar to 60S ribosomal
protein L27a; n=1; Rattus norvegicus|Rep: PREDICTED:
similar to 60S ribosomal protein L27a - Rattus
norvegicus
Length = 86
Score = 33.1 bits (72), Expect = 6.2
Identities = 18/46 (39%), Positives = 20/46 (43%)
Frame = +2
Query: 23 RRLGKLRGHVSXXXXXXXXXXXXXXXXXNAGGEHHHRINMDKYHPG 160
R+ K +GHVS NAGGEH HRIN PG
Sbjct: 6 RKTRKFQGHVSDSHSRISKHHKHRGGQRNAGGEHLHRINCYYKVPG 51
>UniRef50_Q15XN9 Cluster: Glycoside hydrolase family 2, TIM barrel
precursor; n=1; Pseudoalteromonas atlantica T6c|Rep:
Glycoside hydrolase family 2, TIM barrel precursor -
Pseudoalteromonas atlantica (strain T6c / BAA-1087)
Length = 1079
Score = 33.1 bits (72), Expect = 6.2
Identities = 14/30 (46%), Positives = 18/30 (60%)
Frame = +2
Query: 527 SYYNSLAVVLQRRDWENPGVTQLNRLAAHS 616
S+ S V + DWENP V Q+NRL A +
Sbjct: 20 SFTGSAKTVQVKNDWENPDVIQINRLPARA 49
>UniRef50_Q9ZQM0 Cluster: Putative non-LTR retroelement reverse
transcriptase; n=1; Arabidopsis thaliana|Rep: Putative
non-LTR retroelement reverse transcriptase - Arabidopsis
thaliana (Mouse-ear cress)
Length = 1044
Score = 33.1 bits (72), Expect = 6.2
Identities = 14/30 (46%), Positives = 19/30 (63%)
Frame = +1
Query: 142 GQVPSWILWQTWYEKFPL*KEQEFLSSFEL 231
GQ+P WILW W + L EQ+ +SS +L
Sbjct: 842 GQLPIWILWNLWNCRNKLIFEQKHISSMDL 871
>UniRef50_Q232P0 Cluster: MHCK/EF2 kinase domain family protein;
n=1; Tetrahymena thermophila SB210|Rep: MHCK/EF2 kinase
domain family protein - Tetrahymena thermophila SB210
Length = 842
Score = 33.1 bits (72), Expect = 6.2
Identities = 13/39 (33%), Positives = 22/39 (56%)
Frame = -1
Query: 298 PCHLEQMHTSASSVQD*CPKLI*VQNWTEILVLSKVEIS 182
PCH ++ HT+A + CPK + ++ E L +E+S
Sbjct: 184 PCHGKKYHTTADDYPEGCPKGVNIEGLIETLAKRNIELS 222
Database: uniref50
Posted date: Oct 5, 2007 11:19 AM
Number of letters in database: 575,637,011
Number of sequences in database: 1,657,284
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 657,672,875
Number of Sequences: 1657284
Number of extensions: 12703972
Number of successful extensions: 29887
Number of sequences better than 10.0: 29
Number of HSP's better than 10.0 without gapping: 28900
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 29878
length of database: 575,637,011
effective HSP length: 98
effective length of database: 413,223,179
effective search space used: 51239674196
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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