Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0331
         (670 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC776.11 |rpl2801|rpl28-1|60S ribosomal protein Ll28B 27a|Schi...    84   2e-17
SPCC5E4.07 |rpl2802|rpl28-2|60S ribosomal protein L27a.2/L28A|Sc...    83   5e-17
SPCC162.07 |ent1||epsin|Schizosaccharomyces pombe|chr 3|||Manual       28   1.1  
SPCP1E11.02 |ppk38||Ark1/Prk1 family protein kinase Ppk38|Schizo...    25   9.9  

>SPBC776.11 |rpl2801|rpl28-1|60S ribosomal protein Ll28B
           27a|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 148

 Score = 84.2 bits (199), Expect = 2e-17
 Identities = 40/83 (48%), Positives = 46/83 (55%)
 Frame = +2

Query: 11  PPQKRRLGKLRGHVSXXXXXXXXXXXXXXXXXNAGGEHHHRINMDKYHPGYFGKLGMRNF 190
           P    +  KLRGHVS                  AGG  H R + DKYHPGYFGK+GMR F
Sbjct: 2   PTHTSKTRKLRGHVSAGHGRIGKHRKHPGGRGKAGGLQHLRSHFDKYHPGYFGKVGMRRF 61

Query: 191 HFRKNKNFCPVLNLDKLWTLVLN 259
           H  KN  + P +NLD+LWTLV N
Sbjct: 62  HLMKNPLWRPTVNLDRLWTLVPN 84



 Score = 25.0 bits (52), Expect = 9.9
 Identities = 16/64 (25%), Positives = 22/64 (34%)
 Frame = +1

Query: 259 QTRLKYASAPDGKVPVINIVKAXXXXXXXXXXXPKQPVIVXXXXXXXXXXXXXXDVGGAC 438
           +TR KY        PVIN++++           P  PVI+                GG  
Sbjct: 85  ETREKYLGKNTEVAPVINVLQSGYGKVLGKGRLPDTPVIIQTRYVSRRAEEKIKQAGGVV 144

Query: 439 VLSA 450
            L A
Sbjct: 145 ELIA 148


>SPCC5E4.07 |rpl2802|rpl28-2|60S ribosomal protein
           L27a.2/L28A|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 148

 Score = 82.6 bits (195), Expect = 5e-17
 Identities = 39/83 (46%), Positives = 46/83 (55%)
 Frame = +2

Query: 11  PPQKRRLGKLRGHVSXXXXXXXXXXXXXXXXXNAGGEHHHRINMDKYHPGYFGKLGMRNF 190
           P    +  KLRGHVS                  AGG  H R + DKYHPGYFGK+GMR F
Sbjct: 2   PTHVSKTRKLRGHVSAGHGRIGKHRKHPGGRGKAGGLQHLRSHFDKYHPGYFGKVGMRRF 61

Query: 191 HFRKNKNFCPVLNLDKLWTLVLN 259
           H  KN  + P +NLD+LWTL+ N
Sbjct: 62  HLMKNPLWRPTVNLDRLWTLLPN 84


>SPCC162.07 |ent1||epsin|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 706

 Score = 28.3 bits (60), Expect = 1.1
 Identities = 12/48 (25%), Positives = 25/48 (52%)
 Frame = +2

Query: 494 GGPGTNSPYSESYYNSLAVVLQRRDWENPGVTQLNRLAAHSPFASWRN 637
           G  G N+PYS    +    +LQ++  ++    +  +  +++PFA + N
Sbjct: 526 GYTGNNNPYSRPLQSQSTGILQQQQQQSAPRLEPTKTGSNNPFAQFSN 573


>SPCP1E11.02 |ppk38||Ark1/Prk1 family protein kinase
           Ppk38|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 650

 Score = 25.0 bits (52), Expect = 9.9
 Identities = 9/29 (31%), Positives = 16/29 (55%)
 Frame = +2

Query: 506 TNSPYSESYYNSLAVVLQRRDWENPGVTQ 592
           T  PYS+     ++ +LQ+  W+ P + Q
Sbjct: 270 TFPPYSDRLKRLISTLLQQYPWQRPNIYQ 298


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,617,935
Number of Sequences: 5004
Number of extensions: 49934
Number of successful extensions: 121
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 116
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 121
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 305854096
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)